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  5. Cre03.g171650

Cre03.g171650


Description : RNA helicase family protein


Gene families : OG_42_0000651 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000651_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Chlamydomonas release: Cre03.g171650
Cluster HCCA clusters: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
Brara.F00410.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.F03504.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Glyma.05G242800 No alias DEA(D/H)-box RNA helicase family protein 0.01 Orthogroups_2024-Update
Kfl00612_0020 kfl00612_0020_v1.1 (at2g35920 : 974.0) RNA helicase family protein;... 0.02 Orthogroups_2024-Update
LOC_Os10g33275 No alias DEAD/DEAH box helicase domain containing protein, expressed 0.01 Orthogroups_2024-Update
Mp1g27560.1 No alias DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.01 Orthogroups_2024-Update
Potri.004G222900 No alias RNA helicase family protein 0.01 Orthogroups_2024-Update
Potri.016G068900 No alias RNA helicase family protein 0.01 Orthogroups_2024-Update
Seita.5G079500.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g006710 No alias ATP-dependent RNA helicase, putative (AHRD V3.3 *** B9RL32_RICCO) 0.02 Orthogroups_2024-Update
Solyc04g007510 No alias ATP-dependent RNA helicase, putative (AHRD V3.3 *** B9SJY8_RICCO) 0.01 Orthogroups_2024-Update
Sopen01g046100 No alias Helicase associated domain (HA2) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004386 helicase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0001671 ATPase activator activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004181 metallocarboxypeptidase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
BP GO:0006480 N-terminal protein amino acid methylation IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008235 metalloexopeptidase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
BP GO:0031365 N-terminal protein amino acid modification IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0097526 spliceosomal tri-snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 638 793
IPR007502 Helicase-assoc_dom 1101 1190
IPR011709 DUF1605 1329 1427
IPR001650 Helicase_C 903 1031
No external refs found!