Cre03.g188550

Description : P-loop containing nucleoside triphosphate hydrolases superfamily protein

Gene families : OG_42_0000879 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000879_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Chlamydomonas release: Cre03.g188550
Cluster	HCCA clusters: Cluster_99

Target	Alias	Description	ECC score	Gene Family Method
At3g18600	No alias	DEAD-box ATP-dependent RNA helicase 51...	0.01	Orthogroups_2024-Update
Bradi2g39180	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.01	Orthogroups_2024-Update
Bradi4g41160	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.01	Orthogroups_2024-Update
Brara.E00183.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Brara.E02336.1	No alias	regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway	0.01	Orthogroups_2024-Update
Brara.F02458.1	No alias	regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway	0.02	Orthogroups_2024-Update
Pp1s98_4V6	No alias	dead h (asp-glu-ala-asp his) box polypeptide 31	0.01	Orthogroups_2024-Update
Sobic.002G318800.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Solyc07g042270	No alias	RNA helicase DEAD22	0.02	Orthogroups_2024-Update
evm.model.tig00000441.11	No alias	(at3g18600 : 300.0) P-loop containing nucleoside...	0.03	Orthogroups_2024-Update
evm.model.tig00000441.12	No alias	(at5g65900 : 171.0) DEA(D/H)-box RNA helicase family...	0.02	Orthogroups_2024-Update
evm.model.tig00020604.24	No alias	(at5g54910 : 437.0) DEA(D/H)-box RNA helicase family...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003824	catalytic activity	IEP	Predicted GO
MF	GO:0004386	helicase activity	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006400	tRNA modification	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
MF	GO:0008134	transcription factor binding	IEP	Predicted GO
MF	GO:0008168	methyltransferase activity	IEP	Predicted GO
MF	GO:0008173	RNA methyltransferase activity	IEP	Predicted GO
MF	GO:0008536	Ran GTPase binding	IEP	Predicted GO
MF	GO:0008649	rRNA methyltransferase activity	IEP	Predicted GO
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
MF	GO:0016706	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	IEP	Predicted GO
MF	GO:0016740	transferase activity	IEP	Predicted GO
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Predicted GO
MF	GO:0016763	transferase activity, transferring pentosyl groups	IEP	Predicted GO
MF	GO:0016779	nucleotidyltransferase activity	IEP	Predicted GO
MF	GO:0017016	Ras GTPase binding	IEP	Predicted GO
MF	GO:0017025	TBP-class protein binding	IEP	Predicted GO
CC	GO:0030014	CCR4-NOT complex	IEP	Predicted GO
MF	GO:0031267	small GTPase binding	IEP	Predicted GO
MF	GO:0031406	carboxylic acid binding	IEP	Predicted GO
MF	GO:0031418	L-ascorbic acid binding	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
MF	GO:0043177	organic acid binding	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
MF	GO:0048029	monosaccharide binding	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predicted GO
MF	GO:0140102	catalytic activity, acting on a rRNA	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR025313	DUF4217	814	874
IPR001650	Helicase_C	608	732
IPR011545	DEAD/DEAH_box_helicase_dom	292	534

External Links

No external refs found!

Cre03.g188550

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation