1. Home
  2. Species
  3. Chlamydomonas reinhardtii
  4. Sequence
  5. Cre08.g372800

Cre08.g372800


Description : Cleavage and polyadenylation specificity factor (CPSF) A subunit protein


Gene families : OG_42_0004635 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004635_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Chlamydomonas release: Cre08.g372800
Cluster HCCA clusters: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
At3g55200 No alias Spliceosome-associated protein 130 B... 0.01 Orthogroups_2024-Update
Bradi3g03317 No alias Cleavage and polyadenylation specificity factor (CPSF) A... 0.02 Orthogroups_2024-Update
GRMZM2G096972 No alias Cleavage and polyadenylation specificity factor (CPSF) A... 0.02 Orthogroups_2024-Update
Kfl00385_0030 kfl00385_0030_v1.1 (at3g55200 : 1797.0) Cleavage and polyadenylation... 0.01 Orthogroups_2024-Update
MA_10430596g0010 No alias (at3g55200 : 2056.0) Cleavage and polyadenylation... 0.02 Orthogroups_2024-Update
Mp7g13330.1 No alias component SF3B3 of splicing factor 3B complex 0.02 Orthogroups_2024-Update
PSME_00044892-RA No alias (at3g55200 : 1672.0) Cleavage and polyadenylation... 0.03 Orthogroups_2024-Update
Seita.9G555800.1 No alias component *(SF3B3) of splicing factor 3B complex 0.05 Orthogroups_2024-Update
Solyc04g010260 No alias Splicing factor 3B subunit-like protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Sopen04g005450 No alias CPSF A subunit region 0.02 Orthogroups_2024-Update
evm.model.tig00001024.5 No alias (at3g55200 : 962.0) Cleavage and polyadenylation... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0016556 mRNA modification IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017069 snRNA binding IEP Predicted GO
MF GO:0017070 U6 snRNA binding IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0030623 U5 snRNA binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
BP GO:0080009 mRNA methylation IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C 853 1181
No external refs found!