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  5. Solyc09g083350

Solyc09g083350


Description : Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic (AHRD V3.3 *** A0A0B0N0F1_GOSAR)


Gene families : OG_42_0000921 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000921_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc09g083350
Cluster HCCA clusters: Cluster_176

Target Alias Description ECC score Gene Family Method Actions
Bradi2g17390 No alias CRS1 / YhbY (CRM) domain-containing protein 0.06 Orthogroups_2024-Update
Bradi4g14900 No alias CRM family member 3A 0.04 Orthogroups_2024-Update
Bradi4g28800 No alias CRS1 / YhbY (CRM) domain-containing protein 0.02 Orthogroups_2024-Update
Bradi5g12660 No alias CRM family member 2 0.03 Orthogroups_2024-Update
Brara.E01957.1 No alias plastidial RNA splicing factor *(CFM3) 0.02 Orthogroups_2024-Update
Glyma.07G092300 No alias CRS1 / YhbY (CRM) domain-containing protein 0.04 Orthogroups_2024-Update
Mp3g06280.1 No alias CRM-domain containing factor CFM3,... 0.02 Orthogroups_2024-Update
Potri.010G077100 No alias CRM family member 3A 0.03 Orthogroups_2024-Update
Potri.012G056100 No alias CRS1 / YhbY (CRM) domain-containing protein 0.02 Orthogroups_2024-Update
Pp1s70_29V6 No alias crm family member 3 0.02 Orthogroups_2024-Update
Sobic.002G181000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sopen02g030880 No alias CRS1 / YhbY (CRM) domain 0.04 Orthogroups_2024-Update
Sopen03g038300 No alias CRS1 / YhbY (CRM) domain 0.03 Orthogroups_2024-Update
Sopen09g032270 No alias CRS1 / YhbY (CRM) domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004618 phosphoglycerate kinase activity IEP Predicted GO
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEP Predicted GO
MF GO:0005048 signal sequence binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006547 histidine metabolic process IEP Predicted GO
BP GO:0006621 protein retention in ER lumen IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
BP GO:0007155 cell adhesion IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019238 cyclohydrolase activity IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
BP GO:0022610 biological adhesion IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
BP GO:0032507 maintenance of protein location in cell IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Predicted GO
MF GO:0036442 proton-exporting ATPase activity IEP Predicted GO
MF GO:0042277 peptide binding IEP Predicted GO
BP GO:0045185 maintenance of protein location IEP Predicted GO
MF GO:0046923 ER retention sequence binding IEP Predicted GO
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
BP GO:0051205 protein insertion into membrane IEP Predicted GO
BP GO:0051235 maintenance of location IEP Predicted GO
BP GO:0051651 maintenance of location in cell IEP Predicted GO
BP GO:0052803 imidazole-containing compound metabolic process IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
BP GO:0072595 maintenance of protein localization in organelle IEP Predicted GO
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 667 754
IPR001890 RNA-binding_CRM 457 538
IPR001890 RNA-binding_CRM 252 335
No external refs found!