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  5. Cre16.g652900

Cre16.g652900


Description : RNA-binding protein 47A


Gene families : OG_42_0000344 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000344_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Chlamydomonas release: Cre16.g652900
Cluster HCCA clusters: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
A4A49_17345 No alias polyadenylate-binding protein rbp45 0.01 Orthogroups_2024-Update
Brara.F00344.1 No alias regulatory factor *(RBP45/47) of mRNA stress granule formation 0.01 Orthogroups_2024-Update
GRMZM2G467907 No alias RNA-binding protein 47C 0.02 Orthogroups_2024-Update
Glyma.11G133200 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
Glyma.15G106900 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
HORVU2Hr1G106810.1 No alias regulatory factor *(RBP45/47) of mRNA stress granule formation 0.02 Orthogroups_2024-Update
LOC_Os02g35950 No alias RNA recognition motif containing protein, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os08g09100 No alias RNA recognition motif containing protein, putative, expressed 0.01 Orthogroups_2024-Update
PSME_00006933-RA No alias (at3g19130 : 270.0) RNA-binding protein 47B (RBP47B);... 0.01 Orthogroups_2024-Update
PSME_00014443-RA No alias (at5g19350 : 396.0) RNA-binding (RRM/RBD/RNP motifs)... 0.01 Orthogroups_2024-Update
PSME_00021843-RA No alias (at1g47500 : 296.0) RNA-binding protein 47C' (RBP47C');... 0.02 Orthogroups_2024-Update
PSME_00031053-RA No alias (at1g11650 : 281.0) RBP45B; FUNCTIONS IN: RNA binding;... 0.01 Orthogroups_2024-Update
PSME_00033385-RA No alias (at1g49600 : 257.0) RNA-binding protein 47A (RBP47A);... 0.01 Orthogroups_2024-Update
Potri.014G034600 No alias RNA-binding protein 47C 0.01 Orthogroups_2024-Update
Seita.2G332400.1 No alias regulatory factor *(RBP45/47) of mRNA stress granule formation 0.02 Orthogroups_2024-Update
Sobic.001G186100.1 No alias regulatory factor *(RBP45/47) of mRNA stress granule formation 0.02 Orthogroups_2024-Update
Sobic.006G222400.1 No alias regulatory factor *(RBP45/47) of mRNA stress granule formation 0.03 Orthogroups_2024-Update
Solyc07g064510 No alias RNA-binding family protein (AHRD V3.3 *** A0A061FD24_THECC) 0.01 Orthogroups_2024-Update
Solyc10g050860 No alias DNA-binding protein AY506544 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006476 protein deacetylation IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006644 phospholipid metabolic process IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
BP GO:0008610 lipid biosynthetic process IEP Predicted GO
BP GO:0008654 phospholipid biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
CC GO:0016272 prefoldin complex IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016575 histone deacetylation IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0035601 protein deacylation IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
MF GO:0061608 nuclear import signal receptor activity IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
BP GO:0098732 macromolecule deacylation IEP Predicted GO
MF GO:0140104 molecular carrier activity IEP Predicted GO
MF GO:0140142 nucleocytoplasmic carrier activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 14 84
IPR000504 RRM_dom 121 184
No external refs found!