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  5. Cre17.g744147

Cre17.g744147


Description : U5 small nuclear ribonucleoprotein helicase, putative


Gene families : OG_42_0000868 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000868_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Chlamydomonas release: Cre17.g744147
Cluster HCCA clusters: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
At1g20960 No alias DExH-box ATP-dependent RNA helicase DExH12... 0.04 Orthogroups_2024-Update
At2g42270 No alias DExH-box ATP-dependent RNA helicase DExH13... 0.02 Orthogroups_2024-Update
Bradi3g00980 No alias U5 small nuclear ribonucleoprotein helicase, putative 0.03 Orthogroups_2024-Update
Glyma.08G173500 No alias U5 small nuclear ribonucleoprotein helicase, putative 0.02 Orthogroups_2024-Update
Glyma.15G253800 No alias U5 small nuclear ribonucleoprotein helicase, putative 0.02 Orthogroups_2024-Update
Kfl00102_0100 kfl00102_0100_v1.1 (at1g20960 : 2806.0) embryo defective 1507 (emb1507);... 0.03 Orthogroups_2024-Update
MA_81219g0030 No alias (at1g20960 : 1029.0) embryo defective 1507 (emb1507);... 0.01 Orthogroups_2024-Update
PSME_00051380-RA No alias (at1g20960 : 1382.0) embryo defective 1507 (emb1507);... 0.01 Orthogroups_2024-Update
Seita.1G005500.1 No alias RNA helicase *(Brr2) 0.02 Orthogroups_2024-Update
Sobic.001G457800.2 No alias RNA helicase *(Brr2) 0.02 Orthogroups_2024-Update
Sopen02g031330 No alias Sec63 Brl domain 0.04 Orthogroups_2024-Update
Sopen06g033490 No alias Sec63 Brl domain 0.03 Orthogroups_2024-Update
evm.model.tig00000865.27 No alias (at1g20960 : 291.0) embryo defective 1507 (emb1507);... 0.02 Orthogroups_2024-Update
evm.model.tig00000865.28 No alias (at1g20960 : 1091.0) embryo defective 1507 (emb1507);... 0.02 Orthogroups_2024-Update
evm.model.tig00000865.29 No alias (at1g20960 : 190.0) embryo defective 1507 (emb1507);... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
MF GO:0005049 nuclear export signal receptor activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0015298 solute:cation antiporter activity IEP Predicted GO
MF GO:0015299 solute:proton antiporter activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016410 N-acyltransferase activity IEP Predicted GO
BP GO:0016556 mRNA modification IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017069 snRNA binding IEP Predicted GO
MF GO:0017070 U6 snRNA binding IEP Predicted GO
MF GO:0019107 myristoyltransferase activity IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0030623 U5 snRNA binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0080009 mRNA methylation IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:0140104 molecular carrier activity IEP Predicted GO
MF GO:0140142 nucleocytoplasmic carrier activity IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR004179 Sec63-dom 998 1302
IPR011545 DEAD/DEAH_box_helicase_dom 498 674
IPR011545 DEAD/DEAH_box_helicase_dom 1347 1512
IPR004179 Sec63-dom 1835 2155
IPR001650 Helicase_C 724 874
No external refs found!