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  5. MA_116829g0010

MA_116829g0010


Description : (at2g13600 : 451.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 46660 Blast hits to 13875 proteins in 226 species: Archae - 0; Bacteria - 4; Metazoa - 74; Fungi - 58; Plants - 45878; Viruses - 0; Other Eukaryotes - 646 (source: NCBI BLink). & (q76c99|rf1_orysa : 143.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 902.0) & (original description: no original description)


Gene families : OG_42_0014810 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0014810_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_116829g0010
Cluster HCCA clusters: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
MA_12502g0010 No alias (at4g33170 : 392.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00034576-RA No alias (at3g23330 : 325.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 420 468
IPR002885 Pentatricopeptide_repeat 319 366
IPR002885 Pentatricopeptide_repeat 218 265
IPR002885 Pentatricopeptide_repeat 122 152
IPR002885 Pentatricopeptide_repeat 494 517
IPR002885 Pentatricopeptide_repeat 95 117
No external refs found!