Description : (at3g04920 : 188.0) Ribosomal protein S24e family protein; FUNCTIONS IN: structural constituent of ribosome, nucleotide binding; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S24e (InterPro:IPR001976), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal S24e conserved site (InterPro:IPR018098); BEST Arabidopsis thaliana protein match is: Ribosomal protein S24e family protein (TAIR:AT5G28060.1); Has 888 Blast hits to 888 proteins in 327 species: Archae - 80; Bacteria - 0; Metazoa - 406; Fungi - 151; Plants - 124; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). & (reliability: 376.0) & (original description: no original description)
Gene families : OG_42_0001483 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001483_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_119894g0010 | |
Cluster | HCCA clusters: Cluster_20 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
227903 | No alias | Ribosomal protein S24e family protein | 0.03 | Orthogroups_2024-Update | |
271584 | No alias | Ribosomal protein S24e family protein | 0.1 | Orthogroups_2024-Update | |
A4A49_64768 | No alias | 40s ribosomal protein s24-1 | 0.06 | Orthogroups_2024-Update | |
At3g04920 | No alias | 40S ribosomal protein S24-1... | 0.03 | Orthogroups_2024-Update | |
Bradi1g38010 | No alias | Ribosomal protein S24e family protein | 0.02 | Orthogroups_2024-Update | |
Bradi3g08680 | No alias | Ribosomal protein S24e family protein | 0.1 | Orthogroups_2024-Update | |
Brara.A03743.1 | No alias | component *(eS24) of small ribosomal-subunit (SSU) proteome | 0.06 | Orthogroups_2024-Update | |
Brara.B03525.1 | No alias | component *(eS24) of small ribosomal-subunit (SSU) proteome | 0.07 | Orthogroups_2024-Update | |
Brara.E03413.1 | No alias | component *(eS24) of small ribosomal-subunit (SSU) proteome | 0.04 | Orthogroups_2024-Update | |
Brara.F02892.1 | No alias | component *(eS24) of small ribosomal-subunit (SSU) proteome | 0.06 | Orthogroups_2024-Update | |
Brara.I00438.1 | No alias | component *(eS24) of small ribosomal-subunit (SSU) proteome | 0.08 | Orthogroups_2024-Update | |
Cre10.g456200 | No alias | Ribosomal protein S24e family protein | 0.16 | Orthogroups_2024-Update | |
GRMZM2G151252 | No alias | Ribosomal protein S24e family protein | 0.08 | Orthogroups_2024-Update | |
GRMZM2G171426 | No alias | Ribosomal protein S24e family protein | 0.05 | Orthogroups_2024-Update | |
Glyma.03G245300 | No alias | Ribosomal protein S24e family protein | 0.04 | Orthogroups_2024-Update | |
Glyma.10G160300 | No alias | Ribosomal protein S24e family protein | 0.08 | Orthogroups_2024-Update | |
Glyma.19G242700 | No alias | Ribosomal protein S24e family protein | 0.08 | Orthogroups_2024-Update | |
Glyma.20G228100 | No alias | Ribosomal protein S24e family protein | 0.06 | Orthogroups_2024-Update | |
HORVU6Hr1G044840.1 | No alias | component *(eS24) of small ribosomal-subunit (SSU) proteome | 0.04 | Orthogroups_2024-Update | |
HORVU7Hr1G088580.1 | No alias | component *(eS24) of small ribosomal-subunit (SSU) proteome | 0.04 | Orthogroups_2024-Update | |
Kfl00638_0040 | kfl00638_0040_v1.1 | (at3g04920 : 195.0) Ribosomal protein S24e family... | 0.05 | Orthogroups_2024-Update | |
Mp1g10680.1 | No alias | component RPS24 of SSU proteome | 0.04 | Orthogroups_2024-Update | |
PSME_00005358-RA | No alias | (at3g04920 : 189.0) Ribosomal protein S24e family... | 0.07 | Orthogroups_2024-Update | |
PSME_00019619-RA | No alias | (at3g04920 : 187.0) Ribosomal protein S24e family... | 0.05 | Orthogroups_2024-Update | |
Potri.010G087800 | No alias | Ribosomal protein S24e family protein | 0.03 | Orthogroups_2024-Update | |
Potri.013G036100 | No alias | Ribosomal protein S24e family protein | 0.07 | Orthogroups_2024-Update | |
Pp1s204_49V6 | No alias | 40s ribosomal protein | 0.15 | Orthogroups_2024-Update | |
Pp1s37_112V6 | No alias | 40s ribosomal protein | 0.11 | Orthogroups_2024-Update | |
Pp1s450_3V6 | No alias | 40s ribosomal protein | 0.04 | Orthogroups_2024-Update | |
Pp1s450_9V6 | No alias | 40s ribosomal protein | 0.14 | Orthogroups_2024-Update | |
Seita.1G028300.1 | No alias | component *(eS24) of small ribosomal-subunit (SSU) proteome | 0.08 | Orthogroups_2024-Update | |
Seita.4G181700.1 | No alias | component *(eS24) of small ribosomal-subunit (SSU) proteome | 0.1 | Orthogroups_2024-Update | |
Seita.5G301700.1 | No alias | component *(eS24) of small ribosomal-subunit (SSU) proteome | 0.06 | Orthogroups_2024-Update | |
Sobic.003G280700.1 | No alias | component *(eS24) of small ribosomal-subunit (SSU) proteome | 0.12 | Orthogroups_2024-Update | |
Sobic.004G099500.1 | No alias | component *(eS24) of small ribosomal-subunit (SSU) proteome | 0.07 | Orthogroups_2024-Update | |
Sobic.010G166100.1 | No alias | component *(eS24) of small ribosomal-subunit (SSU) proteome | 0.06 | Orthogroups_2024-Update | |
Solyc01g097870 | No alias | 40S ribosomal protein S24 (AHRD V3.3 *** K4B0H4_SOLLC) | 0.04 | Orthogroups_2024-Update | |
Solyc06g084230 | No alias | 40S ribosomal protein S24 (AHRD V3.3 *** K4CUG0_SOLLC) | 0.09 | Orthogroups_2024-Update | |
Solyc09g065330 | No alias | 40S ribosomal protein S24 (AHRD V3.3 *** K4CAS8_SOLLC) | 0.09 | Orthogroups_2024-Update | |
Sopen01g041470 | No alias | Ribosomal protein S24e | 0.03 | Orthogroups_2024-Update | |
Sopen09g027090 | No alias | Ribosomal protein S24e | 0.08 | Orthogroups_2024-Update | |
evm.model.contig_2036.17 | No alias | (at3g04920 : 137.0) Ribosomal protein S24e family... | 0.15 | Orthogroups_2024-Update | |
evm.model.tig00000361.64 | No alias | (at3g04920 : 129.0) Ribosomal protein S24e family... | 0.15 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | InterProScan predictions |
CC | GO:0005622 | intracellular | IEA | InterProScan predictions |
CC | GO:0005840 | ribosome | IEA | InterProScan predictions |
BP | GO:0006412 | translation | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000774 | adenyl-nucleotide exchange factor activity | IEP | Predicted GO |
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003743 | translation initiation factor activity | IEP | Predicted GO |
MF | GO:0003746 | translation elongation factor activity | IEP | Predicted GO |
MF | GO:0003839 | gamma-glutamylcyclotransferase activity | IEP | Predicted GO |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Predicted GO |
CC | GO:0005759 | mitochondrial matrix | IEP | Predicted GO |
CC | GO:0005783 | endoplasmic reticulum | IEP | Predicted GO |
CC | GO:0005875 | microtubule associated complex | IEP | Predicted GO |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006351 | transcription, DNA-templated | IEP | Predicted GO |
BP | GO:0006413 | translational initiation | IEP | Predicted GO |
BP | GO:0006414 | translational elongation | IEP | Predicted GO |
BP | GO:0006457 | protein folding | IEP | Predicted GO |
BP | GO:0006575 | cellular modified amino acid metabolic process | IEP | Predicted GO |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
BP | GO:0006749 | glutathione metabolic process | IEP | Predicted GO |
BP | GO:0006751 | glutathione catabolic process | IEP | Predicted GO |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | Predicted GO |
MF | GO:0016842 | amidine-lyase activity | IEP | Predicted GO |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | Predicted GO |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Predicted GO |
MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
CC | GO:0030286 | dynein complex | IEP | Predicted GO |
CC | GO:0031974 | membrane-enclosed lumen | IEP | Predicted GO |
BP | GO:0032774 | RNA biosynthetic process | IEP | Predicted GO |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Predicted GO |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:0042219 | cellular modified amino acid catabolic process | IEP | Predicted GO |
MF | GO:0042802 | identical protein binding | IEP | Predicted GO |
MF | GO:0042803 | protein homodimerization activity | IEP | Predicted GO |
BP | GO:0043171 | peptide catabolic process | IEP | Predicted GO |
CC | GO:0043227 | membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043233 | organelle lumen | IEP | Predicted GO |
BP | GO:0044273 | sulfur compound catabolic process | IEP | Predicted GO |
CC | GO:0044430 | cytoskeletal part | IEP | Predicted GO |
BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
MF | GO:0051087 | chaperone binding | IEP | Predicted GO |
BP | GO:0051187 | cofactor catabolic process | IEP | Predicted GO |
MF | GO:0060590 | ATPase regulator activity | IEP | Predicted GO |
CC | GO:0070013 | intracellular organelle lumen | IEP | Predicted GO |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | Predicted GO |
MF | GO:0097747 | RNA polymerase activity | IEP | Predicted GO |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001976 | Ribosomal_S24e | 26 | 104 |
No external refs found! |