MA_119894g0010

Description : (at3g04920 : 188.0) Ribosomal protein S24e family protein; FUNCTIONS IN: structural constituent of ribosome, nucleotide binding; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S24e (InterPro:IPR001976), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal S24e conserved site (InterPro:IPR018098); BEST Arabidopsis thaliana protein match is: Ribosomal protein S24e family protein (TAIR:AT5G28060.1); Has 888 Blast hits to 888 proteins in 327 species: Archae - 80; Bacteria - 0; Metazoa - 406; Fungi - 151; Plants - 124; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). & (reliability: 376.0) & (original description: no original description)

Gene families : OG_42_0001483 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001483_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Picea release: MA_119894g0010
Cluster	HCCA clusters: Cluster_20

Target	Alias	Description	ECC score	Gene Family Method
227903	No alias	Ribosomal protein S24e family protein	0.03	Orthogroups_2024-Update
271584	No alias	Ribosomal protein S24e family protein	0.1	Orthogroups_2024-Update
A4A49_64768	No alias	40s ribosomal protein s24-1	0.06	Orthogroups_2024-Update
At3g04920	No alias	40S ribosomal protein S24-1...	0.03	Orthogroups_2024-Update
Bradi1g38010	No alias	Ribosomal protein S24e family protein	0.02	Orthogroups_2024-Update
Bradi3g08680	No alias	Ribosomal protein S24e family protein	0.1	Orthogroups_2024-Update
Brara.A03743.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Brara.B03525.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
Brara.E03413.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Brara.F02892.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Brara.I00438.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.08	Orthogroups_2024-Update
Cre10.g456200	No alias	Ribosomal protein S24e family protein	0.16	Orthogroups_2024-Update
GRMZM2G151252	No alias	Ribosomal protein S24e family protein	0.08	Orthogroups_2024-Update
GRMZM2G171426	No alias	Ribosomal protein S24e family protein	0.05	Orthogroups_2024-Update
Glyma.03G245300	No alias	Ribosomal protein S24e family protein	0.04	Orthogroups_2024-Update
Glyma.10G160300	No alias	Ribosomal protein S24e family protein	0.08	Orthogroups_2024-Update
Glyma.19G242700	No alias	Ribosomal protein S24e family protein	0.08	Orthogroups_2024-Update
Glyma.20G228100	No alias	Ribosomal protein S24e family protein	0.06	Orthogroups_2024-Update
HORVU6Hr1G044840.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
HORVU7Hr1G088580.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Kfl00638_0040	kfl00638_0040_v1.1	(at3g04920 : 195.0) Ribosomal protein S24e family...	0.05	Orthogroups_2024-Update
Mp1g10680.1	No alias	component RPS24 of SSU proteome	0.04	Orthogroups_2024-Update
PSME_00005358-RA	No alias	(at3g04920 : 189.0) Ribosomal protein S24e family...	0.07	Orthogroups_2024-Update
PSME_00019619-RA	No alias	(at3g04920 : 187.0) Ribosomal protein S24e family...	0.05	Orthogroups_2024-Update
Potri.010G087800	No alias	Ribosomal protein S24e family protein	0.03	Orthogroups_2024-Update
Potri.013G036100	No alias	Ribosomal protein S24e family protein	0.07	Orthogroups_2024-Update
Pp1s204_49V6	No alias	40s ribosomal protein	0.15	Orthogroups_2024-Update
Pp1s37_112V6	No alias	40s ribosomal protein	0.11	Orthogroups_2024-Update
Pp1s450_3V6	No alias	40s ribosomal protein	0.04	Orthogroups_2024-Update
Pp1s450_9V6	No alias	40s ribosomal protein	0.14	Orthogroups_2024-Update
Seita.1G028300.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.08	Orthogroups_2024-Update
Seita.4G181700.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.1	Orthogroups_2024-Update
Seita.5G301700.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Sobic.003G280700.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.12	Orthogroups_2024-Update
Sobic.004G099500.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
Sobic.010G166100.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Solyc01g097870	No alias	40S ribosomal protein S24 (AHRD V3.3 *** K4B0H4_SOLLC)	0.04	Orthogroups_2024-Update
Solyc06g084230	No alias	40S ribosomal protein S24 (AHRD V3.3 *** K4CUG0_SOLLC)	0.09	Orthogroups_2024-Update
Solyc09g065330	No alias	40S ribosomal protein S24 (AHRD V3.3 *** K4CAS8_SOLLC)	0.09	Orthogroups_2024-Update
Sopen01g041470	No alias	Ribosomal protein S24e	0.03	Orthogroups_2024-Update
Sopen09g027090	No alias	Ribosomal protein S24e	0.08	Orthogroups_2024-Update
evm.model.contig_2036.17	No alias	(at3g04920 : 137.0) Ribosomal protein S24e family...	0.15	Orthogroups_2024-Update
evm.model.tig00000361.64	No alias	(at3g04920 : 129.0) Ribosomal protein S24e family...	0.15	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003743	translation initiation factor activity	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003839	gamma-glutamylcyclotransferase activity	IEP	Predicted GO
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Predicted GO
CC	GO:0005759	mitochondrial matrix	IEP	Predicted GO
CC	GO:0005783	endoplasmic reticulum	IEP	Predicted GO
CC	GO:0005875	microtubule associated complex	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006351	transcription, DNA-templated	IEP	Predicted GO
BP	GO:0006413	translational initiation	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006457	protein folding	IEP	Predicted GO
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
BP	GO:0006749	glutathione metabolic process	IEP	Predicted GO
BP	GO:0006751	glutathione catabolic process	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
MF	GO:0016779	nucleotidyltransferase activity	IEP	Predicted GO
MF	GO:0016842	amidine-lyase activity	IEP	Predicted GO
BP	GO:0018130	heterocycle biosynthetic process	IEP	Predicted GO
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
CC	GO:0030286	dynein complex	IEP	Predicted GO
CC	GO:0031974	membrane-enclosed lumen	IEP	Predicted GO
BP	GO:0032774	RNA biosynthetic process	IEP	Predicted GO
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Predicted GO
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0042219	cellular modified amino acid catabolic process	IEP	Predicted GO
MF	GO:0042802	identical protein binding	IEP	Predicted GO
MF	GO:0042803	protein homodimerization activity	IEP	Predicted GO
BP	GO:0043171	peptide catabolic process	IEP	Predicted GO
CC	GO:0043227	membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043233	organelle lumen	IEP	Predicted GO
BP	GO:0044273	sulfur compound catabolic process	IEP	Predicted GO
CC	GO:0044430	cytoskeletal part	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
MF	GO:0051087	chaperone binding	IEP	Predicted GO
BP	GO:0051187	cofactor catabolic process	IEP	Predicted GO
MF	GO:0060590	ATPase regulator activity	IEP	Predicted GO
CC	GO:0070013	intracellular organelle lumen	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
BP	GO:0097659	nucleic acid-templated transcription	IEP	Predicted GO
MF	GO:0097747	RNA polymerase activity	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001976	Ribosomal_S24e	26	104

External Links

No external refs found!

MA_119894g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation