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  5. Solyc10g051270

Solyc10g051270


Description : RING/U-box superfamily protein (AHRD V3.3 *** AT2G23780.3)


Gene families : OG_42_0000548 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000548_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc10g051270
Cluster HCCA clusters: Cluster_221

Target Alias Description ECC score Gene Family Method Actions
A4A49_38153 No alias e3 ubiquitin-protein ligase rma1h1 0.03 Orthogroups_2024-Update
Bradi3g49870 No alias RING membrane-anchor 3 0.03 Orthogroups_2024-Update
Brara.H01492.1 No alias E3 ubiquitin ligase *(RMA/MUSE) 0.02 Orthogroups_2024-Update
Cre17.g739100 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.01G178600 No alias RING/U-box superfamily protein 0.06 Orthogroups_2024-Update
LOC_Os03g47500 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003713 transcription coactivator activity IEP Predicted GO
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!