MA_24261g0010

Description : (at5g10980 : 255.0) Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT4G40030.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q71h73|h33_vitvi : 255.0) Histone H3.3 - Vitis vinifera (Grape) & (reliability: 510.0) & (original description: no original description)

Gene families : OG_42_0000090 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000090_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Picea release: MA_24261g0010
Cluster	HCCA clusters: Cluster_179

Target	Alias	Description	ECC score	Gene Family Method
438193	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Brara.C00416.1	No alias	histone *(H3)	0.03	Orthogroups_2024-Update
Cre06.g265250	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre06.g267950	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre06.g274850	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre06.g276600	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre06.g276850	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre12.g504650	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre12.g504800	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre12.g506300	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre12.g506500	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre17.g708150	No alias	Histone superfamily protein	0.01	Orthogroups_2024-Update
Cre17.g708700	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre17.g709050	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
GRMZM2G176358	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
GRMZM2G355773	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Glyma.05G188600	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Glyma.08G245000	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Glyma.12G055200	No alias	Histone superfamily protein	0.05	Orthogroups_2024-Update
HORVU4Hr1G073150.1	No alias	histone *(H3)	0.03	Orthogroups_2024-Update
HORVU6Hr1G031580.1	No alias	histone *(H3)	0.03	Orthogroups_2024-Update
HORVU7Hr1G012820.2	No alias	histone *(H3)	0.04	Orthogroups_2024-Update
HORVU7Hr1G025200.1	No alias	histone *(H3)	0.03	Orthogroups_2024-Update
HORVU7Hr1G033030.1	No alias	histone *(H3)	0.04	Orthogroups_2024-Update
LOC_Os05g41080	No alias	histone H3, putative, expressed	0.03	Orthogroups_2024-Update
Mp7g10730.1	No alias	histone (H3)	0.02	Orthogroups_2024-Update
Mp7g18030.1	No alias	histone (H3)	0.02	Orthogroups_2024-Update
PSME_00017144-RA	No alias	(at5g10980 : 144.0) Histone superfamily protein;...	0.03	Orthogroups_2024-Update
Potri.001G016900	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Potri.002G028800	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Potri.T159501	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Sobic.006G076400.1	No alias	histone *(H3)	0.03	Orthogroups_2024-Update
Sopen01g030790	No alias	Core histone H2A/H2B/H3/H4	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Predicted GO
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Predicted GO
MF	GO:0004512	inositol-3-phosphate synthase activity	IEP	Predicted GO
MF	GO:0004664	prephenate dehydratase activity	IEP	Predicted GO
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Predicted GO
BP	GO:0006020	inositol metabolic process	IEP	Predicted GO
BP	GO:0006021	inositol biosynthetic process	IEP	Predicted GO
BP	GO:0006066	alcohol metabolic process	IEP	Predicted GO
BP	GO:0006558	L-phenylalanine metabolic process	IEP	Predicted GO
BP	GO:0008654	phospholipid biosynthetic process	IEP	Predicted GO
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	Predicted GO
BP	GO:0009094	L-phenylalanine biosynthetic process	IEP	Predicted GO
BP	GO:0009095	aromatic amino acid family biosynthetic process, prephenate pathway	IEP	Predicted GO
BP	GO:0009892	negative regulation of metabolic process	IEP	Predicted GO
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Predicted GO
BP	GO:0010629	negative regulation of gene expression	IEP	Predicted GO
BP	GO:0016458	gene silencing	IEP	Predicted GO
MF	GO:0016836	hydro-lyase activity	IEP	Predicted GO
MF	GO:0016853	isomerase activity	IEP	Predicted GO
MF	GO:0016859	cis-trans isomerase activity	IEP	Predicted GO
MF	GO:0016872	intramolecular lyase activity	IEP	Predicted GO
BP	GO:0018208	peptidyl-proline modification	IEP	Predicted GO
BP	GO:0019751	polyol metabolic process	IEP	Predicted GO
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Predicted GO
BP	GO:0030001	metal ion transport	IEP	Predicted GO
BP	GO:0031047	gene silencing by RNA	IEP	Predicted GO
BP	GO:0044283	small molecule biosynthetic process	IEP	Predicted GO
BP	GO:0046165	alcohol biosynthetic process	IEP	Predicted GO
BP	GO:0046173	polyol biosynthetic process	IEP	Predicted GO
MF	GO:0061630	ubiquitin protein ligase activity	IEP	Predicted GO
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	Predicted GO
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Predicted GO
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Predicted GO
BP	GO:1902221	erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process	IEP	Predicted GO
BP	GO:1902223	erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR007125	Histone_H2A/H2B/H3	52	180

External Links

No external refs found!

MA_24261g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation