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  5. MA_27451g0010

MA_27451g0010


Description : (at1g17980 : 495.0) Encodes a poly(A) polymerase. Located in the nucleus.; poly(A) polymerase 1 (PAPS1); CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Poly(A) polymerase, central domain (InterPro:IPR007012), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Poly(A) polymerase, RNA-binding domain (InterPro:IPR007010); BEST Arabidopsis thaliana protein match is: poly(A) polymerase 2 (TAIR:AT2G25850.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 990.0) & (original description: no original description)


Gene families : OG_42_0001415 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001415_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Picea release: MA_27451g0010
Cluster HCCA clusters: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
A4A49_01274 No alias nuclear poly(a) polymerase 4 0.03 Orthogroups_2024-Update
MA_136671g0010 No alias (at4g32850 : 669.0) Encodes a nuclear poly(A)... 0.03 Orthogroups_2024-Update
PSME_00026682-RA No alias (at4g32850 : 749.0) Encodes a nuclear poly(A)... 0.03 Orthogroups_2024-Update
PSME_00032084-RA No alias (at1g17980 : 796.0) Encodes a poly(A) polymerase.... 0.04 Orthogroups_2024-Update
Pp1s475_11V6 No alias poly polymerase 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
MF GO:0004652 polynucleotide adenylyltransferase activity IEA InterProScan predictions
BP GO:0043631 RNA polyadenylation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0005049 nuclear export signal receptor activity IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:0140104 molecular carrier activity IEP Predicted GO
MF GO:0140142 nucleocytoplasmic carrier activity IEP Predicted GO
InterPro domains Description Start Stop
IPR007010 PolA_pol_RNA-bd_dom 255 327
IPR007010 PolA_pol_RNA-bd_dom 197 255
IPR007012 PolA_pol_cen_dom 20 193
No external refs found!