1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_31115g0010

MA_31115g0010


Description : (at5g51070 : 894.0) ATP-dependent Clp protease regulatory subunit; EARLY RESPONSIVE TO DEHYDRATION 1 (ERD1); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: response to water deprivation; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: CLPC homologue 1 (TAIR:AT5G50920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p35100|clpc_pea : 676.0) ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea) & (reliability: 1788.0) & (original description: no original description)


Gene families : OG_42_0000227 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000227_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_31115g0010
Cluster HCCA clusters: Cluster_230

Target Alias Description ECC score Gene Family Method Actions
Bradi3g45124 No alias heat shock protein 101 0.02 Orthogroups_2024-Update
Brara.B00602.1 No alias organellar chaperone *(Clp-p/Clp-m) 0.02 Orthogroups_2024-Update
Brara.G03189.1 No alias cytosolic chaperone *(Hsp101) 0.03 Orthogroups_2024-Update
Brara.I04445.1 No alias organellar chaperone *(Clp-p/Clp-m) 0.03 Orthogroups_2024-Update
Glyma.06G202200 No alias heat shock protein 101 0.04 Orthogroups_2024-Update
HORVU1Hr1G068970.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU7Hr1G035110.4 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.1G177700.1 No alias chaperone component *(ClpD) of chloroplast Clp-type... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0003006 developmental process involved in reproduction IEP Predicted GO
BP GO:0007275 multicellular organism development IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
BP GO:0009790 embryo development IEP Predicted GO
BP GO:0009793 embryo development ending in seed dormancy IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0032501 multicellular organismal process IEP Predicted GO
BP GO:0032502 developmental process IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0048856 anatomical structure development IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR019489 Clp_ATPase_C 696 774
IPR003959 ATPase_AAA_core 514 689
IPR003959 ATPase_AAA_core 157 292
No external refs found!