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- MA_374514g0010
MA_374514g0010
Description : (at5g16715 : 353.0) embryo defective 2247 (EMB2247); FUNCTIONS IN: valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: tRNA aminoacylation for protein translation, embryo development ending in seed dormancy; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978), Valyl-tRNA synthetase, class Ia (InterPro:IPR002303), Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Valyl-tRNA synthetase, class Ia, tRNA-binding arm (InterPro:IPR019499), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300), Valyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR019754); BEST Arabidopsis thaliana protein match is: valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (TAIR:AT1G14610.1); Has 40467 Blast hits to 37894 proteins in 3157 species: Archae - 953; Bacteria - 21019; Metazoa - 839; Fungi - 772; Plants - 400; Viruses - 0; Other Eukaryotes - 16484 (source: NCBI BLink). & (reliability: 706.0) & (original description: no original description)
Expression Profile
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
Type | Description | Actions |
Neighborhood | Picea release: MA_374514g0010 | |
Cluster | HCCA clusters: Cluster_161 | |
Expression Context Conservation (ECC)
Target | Alias | Description | ECC score | Gene Family Method | Actions |
Bradi1g56890 | No alias | ATP binding;valine-tRNA ligases;aminoacyl-tRNA... | 0.03 | Orthogroups_2024-Update | |
Brara.J01858.1 | No alias | EC_6.1 ligase forming carbon-oxygen bond & valine-tRNA ligase | 0.03 | Orthogroups_2024-Update | |
Potri.017G124500 | No alias | ATP binding;valine-tRNA ligases;aminoacyl-tRNA... | 0.05 | Orthogroups_2024-Update | |
Pp1s70_257V6 | No alias | valyl-trna synthetase | 0.04 | Orthogroups_2024-Update | |
Solyc12g019100 | No alias | Valyl-tRNA synthetase, putative (AHRD V3.3 *** B9SYX1_RICCO) | 0.03 | Orthogroups_2024-Update | |
evm.model.tig00001130.5 | No alias | (at1g14610 : 789.0) Required for proper proliferation of... | 0.02 | Orthogroups_2024-Update | |
Functional Annotation
Type | GO Term | Name | Evidence | Source |
MF | GO:0000166 | nucleotide binding | IEA | InterProScan predictions |
MF | GO:0003674 | molecular_function | None | Extended |
MF | GO:0003824 | catalytic activity | None | Extended |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEA | InterProScan predictions |
MF | GO:0005488 | binding | None | Extended |
MF | GO:0005524 | ATP binding | IEA | InterProScan predictions |
BP | GO:0006082 | organic acid metabolic process | None | Extended |
BP | GO:0006139 | nucleobase-containing compound metabolic process | None | Extended |
BP | GO:0006399 | tRNA metabolic process | None | Extended |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEA | InterProScan predictions |
BP | GO:0006520 | cellular amino acid metabolic process | None | Extended |
BP | GO:0006725 | cellular aromatic compound metabolic process | None | Extended |
BP | GO:0006807 | nitrogen compound metabolic process | None | Extended |
MF | GO:0008144 | drug binding | None | Extended |
BP | GO:0008150 | biological_process | None | Extended |
BP | GO:0008152 | metabolic process | None | Extended |
BP | GO:0009987 | cellular process | None | Extended |
BP | GO:0016070 | RNA metabolic process | None | Extended |
MF | GO:0016874 | ligase activity | None | Extended |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | None | Extended |
MF | GO:0017076 | purine nucleotide binding | None | Extended |
BP | GO:0019752 | carboxylic acid metabolic process | None | Extended |
MF | GO:0030554 | adenyl nucleotide binding | None | Extended |
MF | GO:0032553 | ribonucleotide binding | None | Extended |
MF | GO:0032555 | purine ribonucleotide binding | None | Extended |
MF | GO:0032559 | adenyl ribonucleotide binding | None | Extended |
BP | GO:0034641 | cellular nitrogen compound metabolic process | None | Extended |
BP | GO:0034660 | ncRNA metabolic process | None | Extended |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | None | Extended |
MF | GO:0036094 | small molecule binding | None | Extended |
BP | GO:0043038 | amino acid activation | None | Extended |
BP | GO:0043039 | tRNA aminoacylation | None | Extended |
MF | GO:0043167 | ion binding | None | Extended |
MF | GO:0043168 | anion binding | None | Extended |
BP | GO:0043170 | macromolecule metabolic process | None | Extended |
BP | GO:0043436 | oxoacid metabolic process | None | Extended |
BP | GO:0044237 | cellular metabolic process | None | Extended |
BP | GO:0044238 | primary metabolic process | None | Extended |
BP | GO:0044281 | small molecule metabolic process | None | Extended |
BP | GO:0046483 | heterocycle metabolic process | None | Extended |
BP | GO:0071704 | organic substance metabolic process | None | Extended |
BP | GO:0090304 | nucleic acid metabolic process | None | Extended |
MF | GO:0097159 | organic cyclic compound binding | None | Extended |
MF | GO:0097367 | carbohydrate derivative binding | None | Extended |
MF | GO:0140098 | catalytic activity, acting on RNA | None | Extended |
MF | GO:0140101 | catalytic activity, acting on a tRNA | None | Extended |
MF | GO:1901265 | nucleoside phosphate binding | None | Extended |
BP | GO:1901360 | organic cyclic compound metabolic process | None | Extended |
MF | GO:1901363 | heterocyclic compound binding | None | Extended |
BP | GO:1901564 | organonitrogen compound metabolic process | None | Extended |
Type | GO Term | Name | Evidence | Source |
BP | GO:0000272 | polysaccharide catabolic process | IEP | Predicted GO |
MF | GO:0000295 | adenine nucleotide transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0004019 | adenylosuccinate synthase activity | IEP | Predicted GO |
MF | GO:0004222 | metalloendopeptidase activity | IEP | Predicted GO |
MF | GO:0004512 | inositol-3-phosphate synthase activity | IEP | Predicted GO |
MF | GO:0004813 | alanine-tRNA ligase activity | IEP | Predicted GO |
MF | GO:0005315 | inorganic phosphate transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0005346 | purine ribonucleotide transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0005347 | ATP transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0005471 | ATP:ADP antiporter activity | IEP | Predicted GO |
BP | GO:0005985 | sucrose metabolic process | IEP | Predicted GO |
BP | GO:0006020 | inositol metabolic process | IEP | Predicted GO |
BP | GO:0006021 | inositol biosynthetic process | IEP | Predicted GO |
BP | GO:0006066 | alcohol metabolic process | IEP | Predicted GO |
BP | GO:0006419 | alanyl-tRNA aminoacylation | IEP | Predicted GO |
BP | GO:0006817 | phosphate ion transport | IEP | Predicted GO |
BP | GO:0006862 | nucleotide transport | IEP | Predicted GO |
MF | GO:0008237 | metallopeptidase activity | IEP | Predicted GO |
MF | GO:0008514 | organic anion transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0008654 | phospholipid biosynthetic process | IEP | Predicted GO |
CC | GO:0009521 | photosystem | IEP | Predicted GO |
CC | GO:0009523 | photosystem II | IEP | Predicted GO |
CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | Predicted GO |
MF | GO:0015215 | nucleotide transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0015216 | purine nucleotide transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0015217 | ADP transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0015291 | secondary active transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0015301 | anion:anion antiporter activity | IEP | Predicted GO |
MF | GO:0015605 | organophosphate ester transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0015748 | organophosphate ester transport | IEP | Predicted GO |
BP | GO:0015931 | nucleobase-containing compound transport | IEP | Predicted GO |
MF | GO:0015932 | nucleobase-containing compound transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0015979 | photosynthesis | IEP | Predicted GO |
MF | GO:0016157 | sucrose synthase activity | IEP | Predicted GO |
MF | GO:0016160 | amylase activity | IEP | Predicted GO |
MF | GO:0016161 | beta-amylase activity | IEP | Predicted GO |
MF | GO:0016872 | intramolecular lyase activity | IEP | Predicted GO |
BP | GO:0019637 | organophosphate metabolic process | IEP | Predicted GO |
BP | GO:0019751 | polyol metabolic process | IEP | Predicted GO |
CC | GO:0019867 | outer membrane | IEP | Predicted GO |
CC | GO:0019898 | extrinsic component of membrane | IEP | Predicted GO |
BP | GO:0046165 | alcohol biosynthetic process | IEP | Predicted GO |
BP | GO:0046173 | polyol biosynthetic process | IEP | Predicted GO |
BP | GO:0090407 | organophosphate biosynthetic process | IEP | Predicted GO |
MF | GO:0099516 | ion antiporter activity | IEP | Predicted GO |
MF | GO:1901505 | carbohydrate derivative transmembrane transporter activity | IEP | Predicted GO |
BP | GO:1901615 | organic hydroxy compound metabolic process | IEP | Predicted GO |
BP | GO:1901617 | organic hydroxy compound biosynthetic process | IEP | Predicted GO |
CC | GO:1990204 | oxidoreductase complex | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
IPR002300 | aa-tRNA-synth_Ia | 3 | 235 |