MA_38141g0010

Description : (p49210|rl9_orysa : 311.0) 60S ribosomal protein L9 - Oryza sativa (Rice) & (at1g33140 : 298.0) Encodes ribosomal protein L9. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.; PIGGYBACK2 (PGY2); FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: adaxial/abaxial pattern formation, translation; LOCATED IN: cytosolic large ribosomal subunit, vacuole, large ribosomal subunit, membrane, chloroplast envelope; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702), Ribosomal protein L6, alpha-beta domain (InterPro:IPR020040), Ribosomal protein L6, conserved site-2 (InterPro:IPR002359); BEST Arabidopsis thaliana protein match is: Ribosomal protein L6 family (TAIR:AT1G33120.1); Has 1644 Blast hits to 1643 proteins in 495 species: Archae - 312; Bacteria - 169; Metazoa - 422; Fungi - 179; Plants - 339; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink). & (reliability: 596.0) & (original description: no original description)

Gene families : OG_42_0002219 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002219_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Picea release: MA_38141g0010
Cluster	HCCA clusters: Cluster_20

Target	Alias	Description	ECC score	Gene Family Method
269009	No alias	Ribosomal protein L6 family	0.1	Orthogroups_2024-Update
At4g10450	No alias	60S ribosomal protein L9-2...	0.04	Orthogroups_2024-Update
Bradi1g21850	No alias	Ribosomal protein L6 family	0.03	Orthogroups_2024-Update
Brara.B02434.1	No alias	component *(uL6) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Brara.B02733.1	No alias	component *(uL6) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Brara.I02353.1	No alias	component *(uL6) of large ribosomal-subunit (LSU) proteome	0.1	Orthogroups_2024-Update
Brara.I02694.1	No alias	component *(uL6) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Cre12.g494050	No alias	Ribosomal protein L6 family	0.1	Orthogroups_2024-Update
Glyma.04G226900	No alias	Ribosomal protein L6 family	0.09	Orthogroups_2024-Update
Glyma.06G138400	No alias	Ribosomal protein L6 family	0.07	Orthogroups_2024-Update
Glyma.06G138600	No alias	Ribosomal protein L6 family	0.07	Orthogroups_2024-Update
Glyma.06G138700	No alias	Ribosomal protein L6 family	0.03	Orthogroups_2024-Update
HORVU0Hr1G006020.2	No alias	component *(uL6) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
HORVU3Hr1G001140.5	No alias	component *(uL6) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
HORVU7Hr1G002060.1	No alias	component *(uL6) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
Kfl00025_0220	kfl00025_0220_v1.1	(p30707\|rl9_pea : 285.0) 60S ribosomal protein L9...	0.06	Orthogroups_2024-Update
LOC_Os02g01332	No alias	ribosomal protein L6, putative, expressed	0.02	Orthogroups_2024-Update
Potri.001G454000	No alias	Ribosomal protein L6 family	0.07	Orthogroups_2024-Update
Potri.011G148700	No alias	Ribosomal protein L6 family	0.05	Orthogroups_2024-Update
Pp1s164_98V6	No alias	60s ribosomal protein l9	0.06	Orthogroups_2024-Update
Pp1s327_43V6	No alias	60s ribosomal protein l9	0.12	Orthogroups_2024-Update
Pp1s58_149V6	No alias	60s ribosomal protein l9	0.1	Orthogroups_2024-Update
Pp1s79_157V6	No alias	60s ribosomal protein l9	0.12	Orthogroups_2024-Update
Seita.1G003100.1	No alias	component *(uL6) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
Seita.4G005200.1	No alias	component *(uL6) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Sobic.010G005300.1	No alias	component *(uL6) of large ribosomal-subunit (LSU) proteome	0.13	Orthogroups_2024-Update
Solyc08g014550	No alias	60S ribosomal L9 (AHRD V3.3 *** A0A0B0N9P7_GOSAR)	0.08	Orthogroups_2024-Update
Solyc12g096700	No alias	60S ribosomal L9 (AHRD V3.3 *** A0A0B0N9P7_GOSAR)	0.07	Orthogroups_2024-Update
Sopen06g029670	No alias	Ribosomal protein L6	0.07	Orthogroups_2024-Update
Sopen08g005520	No alias	Ribosomal protein L6	0.02	Orthogroups_2024-Update
Sopen12g032530	No alias	Ribosomal protein L6	0.06	Orthogroups_2024-Update
evm.model.contig_564.5	No alias	(at4g10450 : 215.0) Ribosomal protein L6 family;...	0.14	Orthogroups_2024-Update
evm.model.tig00001532.12	No alias	(p49210\|rl9_orysa : 196.0) 60S ribosomal protein L9 -...	0.06	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	InterProScan predictions
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003779	actin binding	IEP	Predicted GO
MF	GO:0003839	gamma-glutamylcyclotransferase activity	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
CC	GO:0005759	mitochondrial matrix	IEP	Predicted GO
CC	GO:0005875	microtubule associated complex	IEP	Predicted GO
BP	GO:0006413	translational initiation	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Predicted GO
BP	GO:0006749	glutathione metabolic process	IEP	Predicted GO
BP	GO:0006751	glutathione catabolic process	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Predicted GO
MF	GO:0016842	amidine-lyase activity	IEP	Predicted GO
CC	GO:0030286	dynein complex	IEP	Predicted GO
CC	GO:0031974	membrane-enclosed lumen	IEP	Predicted GO
BP	GO:0042219	cellular modified amino acid catabolic process	IEP	Predicted GO
BP	GO:0043171	peptide catabolic process	IEP	Predicted GO
CC	GO:0043233	organelle lumen	IEP	Predicted GO
BP	GO:0044273	sulfur compound catabolic process	IEP	Predicted GO
CC	GO:0044430	cytoskeletal part	IEP	Predicted GO
BP	GO:0051187	cofactor catabolic process	IEP	Predicted GO
CC	GO:0070013	intracellular organelle lumen	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR020040	Ribosomal_L6_a/b-dom	12	86
IPR020040	Ribosomal_L6_a/b-dom	98	177

External Links

No external refs found!

MA_38141g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation