MA_6335g0010

Description : "(at5g64660 : 281.0) ""CYS, MET, PRO, and GLY protein 2"" (CMPG2); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G09800.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q64ha9|spl11_orysa : 127.0) Spotted leaf protein 11 (Spotted leaf11) (Cell death-related protein SPL11) - Oryza sativa (Rice) & (reliability: 562.0) & (original description: no original description)"

Gene families : OG_42_0000112 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000112_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Picea release: MA_6335g0010
Cluster	HCCA clusters: Cluster_79

Target	Alias	Description	ECC score	Gene Family Method
416356	No alias	plant U-box 24	0.03	Orthogroups_2024-Update
426053	No alias	plant U-box 24	0.02	Orthogroups_2024-Update
A4A49_22370	No alias	u-box domain-containing protein 26	0.04	Orthogroups_2024-Update
Bradi3g45380	No alias	plant U-box 25	0.02	Orthogroups_2024-Update
HORVU4Hr1G064070.1	No alias	E3 ubiquitin ligase	0.03	Orthogroups_2024-Update
Kfl00376_0010	kfl00376_0010_v1....	(at2g28830 : 87.8) PLANT U-BOX 12 (PUB12); FUNCTIONS IN:...	0.03	Orthogroups_2024-Update
LOC_Os02g33590	No alias	U-box domain-containing protein, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os02g34410	No alias	U-box domain-containing protein, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os06g30330	No alias	U-box domain containing protein, putative, expressed	0.02	Orthogroups_2024-Update
MA_415393g0010	No alias	(at3g19380 : 146.0) plant U-box 25 (PUB25); FUNCTIONS...	0.03	Orthogroups_2024-Update
PSME_00043995-RA	No alias	(at1g49780 : 227.0) plant U-box 26 (PUB26); FUNCTIONS...	0.06	Orthogroups_2024-Update
PSME_00054803-RA	No alias	(at3g52450 : 283.0) Encodes a cytoplasmically localized...	0.03	Orthogroups_2024-Update
PSME_00056516-RA	No alias	(at3g19380 : 420.0) plant U-box 25 (PUB25); FUNCTIONS...	0.04	Orthogroups_2024-Update
Potri.017G135000	No alias	ARM repeat superfamily protein	0.03	Orthogroups_2024-Update
Seita.1G186200.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Seita.9G474100.1	No alias	E3 ubiquitin ligase	0.04	Orthogroups_2024-Update
Sobic.001G441100.1	No alias	E3 ubiquitin ligase	0.04	Orthogroups_2024-Update
Sobic.003G367000.1	No alias	E3 ubiquitin ligase	0.04	Orthogroups_2024-Update
Sobic.004G169200.1	No alias	E3 ubiquitin ligase	0.03	Orthogroups_2024-Update
Sobic.004G169900.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Sobic.010G102000.1	No alias	E3 ubiquitin ligase	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	InterProScan predictions
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	InterProScan predictions
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003712	transcription coregulator activity	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Predicted GO
CC	GO:0016592	mediator complex	IEP	Predicted GO
MF	GO:0030976	thiamine pyrophosphate binding	IEP	Predicted GO
CC	GO:0044451	nucleoplasm part	IEP	Predicted GO
MF	GO:0051287	NAD binding	IEP	Predicted GO
MF	GO:1901681	sulfur compound binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	10	80

External Links

No external refs found!

MA_6335g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation