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Description : (at1g04080 : 605.0) PRP39; INVOLVED IN: regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: intracellular; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G46400.1). & (reliability: 1210.0) & (original description: no original description)
Gene families : OG_42_0002928 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002928_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_6626g0010 | |
| Cluster | HCCA clusters: Cluster_47 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| At1g04080 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein... | 0.04 | Orthogroups_2024-Update | |
| Bradi3g35037 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | Orthogroups_2024-Update | |
| Glyma.03G167000 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.08G122000 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Pp1s30_190V6 | No alias | F21M11.23; hydroxyproline-rich glycoprotein family... | 0.02 | Orthogroups_2024-Update | |
| Seita.9G495800.1 | No alias | pre-mRNA-processing protein *(PRP39) | 0.02 | Orthogroups_2024-Update | |
| Sobic.007G116200.1 | No alias | pre-mRNA-processing protein *(PRP39) | 0.04 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000155 | phosphorelay sensor kinase activity | IEP | Predicted GO |
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Predicted GO |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Predicted GO |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Predicted GO |
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0003712 | transcription coregulator activity | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0004402 | histone acetyltransferase activity | IEP | Predicted GO |
| MF | GO:0004527 | exonuclease activity | IEP | Predicted GO |
| MF | GO:0004652 | polynucleotide adenylyltransferase activity | IEP | Predicted GO |
| MF | GO:0004673 | protein histidine kinase activity | IEP | Predicted GO |
| MF | GO:0005488 | binding | IEP | Predicted GO |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0006396 | RNA processing | IEP | Predicted GO |
| BP | GO:0006473 | protein acetylation | IEP | Predicted GO |
| BP | GO:0006475 | internal protein amino acid acetylation | IEP | Predicted GO |
| MF | GO:0008080 | N-acetyltransferase activity | IEP | Predicted GO |
| BP | GO:0008380 | RNA splicing | IEP | Predicted GO |
| BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
| MF | GO:0016407 | acetyltransferase activity | IEP | Predicted GO |
| MF | GO:0016410 | N-acyltransferase activity | IEP | Predicted GO |
| BP | GO:0016573 | histone acetylation | IEP | Predicted GO |
| MF | GO:0016775 | phosphotransferase activity, nitrogenous group as acceptor | IEP | Predicted GO |
| MF | GO:0017069 | snRNA binding | IEP | Predicted GO |
| MF | GO:0017070 | U6 snRNA binding | IEP | Predicted GO |
| BP | GO:0018205 | peptidyl-lysine modification | IEP | Predicted GO |
| BP | GO:0018393 | internal peptidyl-lysine acetylation | IEP | Predicted GO |
| BP | GO:0018394 | peptidyl-lysine acetylation | IEP | Predicted GO |
| MF | GO:0030623 | U5 snRNA binding | IEP | Predicted GO |
| CC | GO:0031011 | Ino80 complex | IEP | Predicted GO |
| CC | GO:0033202 | DNA helicase complex | IEP | Predicted GO |
| MF | GO:0034212 | peptide N-acetyltransferase activity | IEP | Predicted GO |
| BP | GO:0043543 | protein acylation | IEP | Predicted GO |
| BP | GO:0043631 | RNA polyadenylation | IEP | Predicted GO |
| CC | GO:0044454 | nuclear chromosome part | IEP | Predicted GO |
| MF | GO:0061733 | peptide-lysine-N-acetyltransferase activity | IEP | Predicted GO |
| MF | GO:0070566 | adenylyltransferase activity | IEP | Predicted GO |
| CC | GO:0070603 | SWI/SNF superfamily-type complex | IEP | Predicted GO |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
| CC | GO:0097346 | INO80-type complex | IEP | Predicted GO |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
| CC | GO:1904949 | ATPase complex | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |