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  5. MA_86810g0010

MA_86810g0010


Description : (at2g35980 : 111.0) Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and during senescence. The gene product is localized to the chloroplast.; YELLOW-LEAF-SPECIFIC GENE 9 (YLS9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to virus, leaf senescence, response to other organism; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: NDR1/HIN1-like 2 (TAIR:AT3G11650.1); Has 1046 Blast hits to 1046 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1046; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 222.0) & (original description: no original description)


Gene families : OG_42_0000387 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000387_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_86810g0010
Cluster HCCA clusters: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
Bradi3g45160 No alias Late embryogenesis abundant (LEA) hydroxyproline-rich... 0.03 Orthogroups_2024-Update
Bradi4g41990 No alias Late embryogenesis abundant (LEA) hydroxyproline-rich... 0.03 Orthogroups_2024-Update
Bradi5g09670 No alias Late embryogenesis abundant (LEA) hydroxyproline-rich... 0.03 Orthogroups_2024-Update
Brara.E02913.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G406119 No alias Late embryogenesis abundant (LEA) hydroxyproline-rich... 0.02 Orthogroups_2024-Update
PSME_00044088-RA No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Pp1s134_135V6 No alias No description available 0.02 Orthogroups_2024-Update
Seita.6G003000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G296000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen03g021960 No alias Late embryogenesis abundant protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001671 ATPase activator activity IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0004556 alpha-amylase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
CC GO:0030118 clathrin coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030125 clathrin vesicle coat IEP Predicted GO
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Predicted GO
CC GO:0030132 clathrin coat of coated pit IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004864 LEA_2 168 268
No external refs found!