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  5. Solyc11g008210

Solyc11g008210


Description : Glycine-rich RNA-binding family protein (AHRD V3.3 *** B9HUL0_POPTR)


Gene families : OG_42_0000107 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc11g008210
Cluster HCCA clusters: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
A4A49_10213 No alias glycine-rich rna-binding protein rz1a 0.03 Orthogroups_2024-Update
Brara.C01346.1 No alias RNA editing factor *(ORRM2) 0.03 Orthogroups_2024-Update
Glyma.03G198500 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.04 Orthogroups_2024-Update
LOC_Os03g46770 No alias RNA recognition motif containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g13630 No alias RNA recognition motif containing protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_9972313g0010 No alias (at5g61030 : 113.0) encodes a glycine-rich RNA binding... 0.02 Orthogroups_2024-Update
Seita.9G061400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.9G139100.1 No alias RNA chaperone *(RZ1) 0.03 Orthogroups_2024-Update
Seita.9G450300.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003713 transcription coactivator activity IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
BP GO:0016049 cell growth IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
BP GO:0040007 growth IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
MF GO:0050661 NADP binding IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 71 87
IPR000504 RRM_dom 3 40
No external refs found!