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  5. Pp1s186_64V6

Pp1s186_64V6


Description : hypothetical protein [Oryza sativa (japonica cultivar-group)]


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s186_64V6
Cluster HCCA clusters: Cluster_225

Target Alias Description ECC score Gene Family Method Actions
30579 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
34785 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
74749 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi5g27691 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Brara.A03228.1 No alias RNA editing factor *(OTP72) 0.04 Orthogroups_2024-Update
Brara.B03211.1 No alias Unknown function 0.02 Orthogroups_2024-Update
GRMZM2G168170 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.09G086600 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.12G239300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.18G085900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G110410.2 No alias RNA editing factor *(OTP72) 0.02 Orthogroups_2024-Update
HORVU4Hr1G009150.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G091320.4 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU7Hr1G030840.1 No alias RNA editing factor *(MEF29) 0.02 Orthogroups_2024-Update
PSME_00015055-RA No alias (at1g11290 : 619.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00035450-RA No alias (at4g33990 : 517.0) embryo defective 2758 (EMB2758);... 0.02 Orthogroups_2024-Update
PSME_00056368-RA No alias (at1g11290 : 697.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
Potri.004G178200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Pp1s169_110V6 No alias T12J13.14; pentatricopeptide (PPR) repeat-containing... 0.02 Orthogroups_2024-Update
Seita.6G130100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.003G182501.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.009G054200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g098150 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen02g024080 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
MF GO:0000702 oxidized base lesion DNA N-glycosylase activity IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0004650 polygalacturonase activity IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006904 vesicle docking involved in exocytosis IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
MF GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
BP GO:0140029 exocytic process IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 331 379
IPR002885 Pentatricopeptide_repeat 533 579
IPR002885 Pentatricopeptide_repeat 128 176
IPR002885 Pentatricopeptide_repeat 432 479
IPR002885 Pentatricopeptide_repeat 204 229
IPR002885 Pentatricopeptide_repeat 674 702
IPR002885 Pentatricopeptide_repeat 507 532
IPR032867 DYW_dom 706 830
IPR002885 Pentatricopeptide_repeat 232 277
IPR002885 Pentatricopeptide_repeat 51 109
No external refs found!