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  5. Pp1s196_122V6

Pp1s196_122V6


Description : 50s ribosomal protein l4


Gene families : OG_42_0008241 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008241_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s196_122V6
Cluster HCCA clusters: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
Bradi1g67170 No alias ribosomal protein L4 0.02 Orthogroups_2024-Update
Cre11.g479500 No alias ribosomal protein L4 0.03 Orthogroups_2024-Update
HORVU4Hr1G060970.1 No alias component *(uL4c) of large plastid ribosomal-subunit proteome 0.05 Orthogroups_2024-Update
Kfl00160_0190 kfl00160_0190_v1.1 (o80361|rk4_tobac : 221.0) 50S ribosomal protein L4,... 0.06 Orthogroups_2024-Update
Potri.006G221100 No alias ribosomal protein L4 0.02 Orthogroups_2024-Update
Seita.9G457200.1 No alias component *(uL4c) of large plastid ribosomal-subunit proteome 0.03 Orthogroups_2024-Update
Sopen07g030180 No alias Ribosomal protein L4/L1 family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0005622 intracellular IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0008716 D-alanine-D-alanine ligase activity IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002136 Ribosomal_L4/L1e 91 270
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