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  5. Pp1s220_57V6

Pp1s220_57V6


Description : F10E10.5; pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]


Gene families : OG_42_0001517 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001517_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s220_57V6
Cluster HCCA clusters: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
At5g46580 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.02 Orthogroups_2024-Update
Brara.F03614.1 No alias endoribonuclease *(SOT1) 0.05 Orthogroups_2024-Update
Glyma.09G013400 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Glyma.09G013600 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
MA_283144g0010 No alias (at5g46580 : 637.0) pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00029260-RA No alias (at4g16390 : 625.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
Potri.003G089600 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Seita.9G005100.1 No alias endoribonuclease *(SOT1) 0.02 Orthogroups_2024-Update
Seita.9G489900.1 No alias plastidial RNA processing factor *(SVR7) 0.02 Orthogroups_2024-Update
Sobic.001G455500.1 No alias plastidial RNA processing factor *(SVR7) 0.03 Orthogroups_2024-Update
Solyc08g077120 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc11g012670 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Sopen08g025700 No alias PPR repeat family 0.05 Orthogroups_2024-Update
Sopen11g007400 No alias PPR repeat family 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003852 2-isopropylmalate synthase activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006188 IMP biosynthetic process IEP Predicted GO
BP GO:0006189 'de novo' IMP biosynthetic process IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006551 leucine metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0006814 sodium ion transport IEP Predicted GO
BP GO:0007030 Golgi organization IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0009081 branched-chain amino acid metabolic process IEP Predicted GO
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Predicted GO
BP GO:0009098 leucine biosynthetic process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
BP GO:0046040 IMP metabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 258 303
IPR002885 Pentatricopeptide_repeat 398 445
IPR002885 Pentatricopeptide_repeat 189 234
IPR002885 Pentatricopeptide_repeat 328 373
IPR002885 Pentatricopeptide_repeat 456 512
No external refs found!