1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp1s258_19V6

Pp1s258_19V6


Description : 30s ribosomal protein s13


Gene families : OG_42_0004280 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004280_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s258_19V6
Cluster HCCA clusters: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
A4A49_22126 No alias 30s ribosomal protein s13, chloroplastic 0.09 Orthogroups_2024-Update
Bradi1g10990 No alias Ribosomal protein S13/S18 family 0.04 Orthogroups_2024-Update
Brara.C00617.1 No alias component *(uS13c) of small plastid ribosomal-subunit proteome 0.09 Orthogroups_2024-Update
Brara.J02025.1 No alias component *(uS13c) of small plastid ribosomal-subunit proteome 0.13 Orthogroups_2024-Update
Cre12.g493950 No alias Ribosomal protein S13/S18 family 0.13 Orthogroups_2024-Update
Glyma.04G253300 No alias Ribosomal protein S13/S18 family 0.06 Orthogroups_2024-Update
Kfl00859_0050 kfl00859_0050_v1.1 (at5g14320 : 143.0) Ribosomal protein S13/S18 family;... 0.08 Orthogroups_2024-Update
LOC_Os03g49710 No alias ribosomal protein S13p/S18e, putative, expressed 0.03 Orthogroups_2024-Update
MA_10431241g0010 No alias (at5g14320 : 217.0) Ribosomal protein S13/S18 family;... 0.04 Orthogroups_2024-Update
Mp1g18230.1 No alias component mtRPS13|psRPS13 of small ribosomal subunit... 0.06 Orthogroups_2024-Update
Potri.002G088300 No alias Ribosomal protein S13/S18 family 0.07 Orthogroups_2024-Update
Potri.005G172600 No alias Ribosomal protein S13/S18 family 0.04 Orthogroups_2024-Update
Seita.9G124300.1 No alias component *(uS13c) of small plastid ribosomal-subunit proteome 0.06 Orthogroups_2024-Update
Seita.9G124400.1 No alias component *(uS13c) of small plastid ribosomal-subunit proteome 0.08 Orthogroups_2024-Update
Sobic.001G122400.1 No alias component *(uS13c) of small plastid ribosomal-subunit proteome 0.08 Orthogroups_2024-Update
Solyc05g005880 No alias No description available 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004356 glutamate-ammonia ligase activity IEP Predicted GO
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006541 glutamine metabolic process IEP Predicted GO
BP GO:0006542 glutamine biosynthetic process IEP Predicted GO
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Predicted GO
BP GO:0015986 ATP synthesis coupled proton transport IEP Predicted GO
MF GO:0016211 ammonia ligase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
BP GO:0019693 ribose phosphate metabolic process IEP Predicted GO
MF GO:0019829 cation-transporting ATPase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0022853 active ion transmembrane transporter activity IEP Predicted GO
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Predicted GO
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Predicted GO
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP Predicted GO
MF GO:0046422 violaxanthin de-epoxidase activity IEP Predicted GO
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Predicted GO
InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 59 163
No external refs found!