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  5. Pp1s28_10V6

Pp1s28_10V6


Description : 60s ribosomal protein l7-2


Gene families : OG_42_0001114 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001114_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s28_10V6
Cluster HCCA clusters: Cluster_215

Target Alias Description ECC score Gene Family Method Actions
103994 No alias Ribosomal protein L30/L7 family protein 0.03 Orthogroups_2024-Update
Glyma.09G061000 No alias Ribosomal protein L30/L7 family protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G108990.2 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Kfl00380_0050 kfl00380_0050_v1.1 (at2g01250 : 349.0) Ribosomal protein L30/L7 family... 0.02 Orthogroups_2024-Update
Mp3g13040.1 No alias component RPL7 of LSU proteome component 0.02 Orthogroups_2024-Update
Pp1s2_667V6 No alias 60s ribosomal protein 0.03 Orthogroups_2024-Update
Sobic.006G206500.5 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Sobic.K033000.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Solyc06g068400 No alias 60S ribosomal protein L7 (AHRD V3.3 *** B9GMC3_POPTR) 0.02 Orthogroups_2024-Update
evm.model.contig_2085.3 No alias (at3g13580 : 237.0) Ribosomal protein L30/L7 family... 0.01 Orthogroups_2024-Update
evm.model.tig00020909.42 No alias (at2g44120 : 205.0) Ribosomal protein L30/L7 family... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003713 transcription coactivator activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR012988 Ribosomal_L30_N 10 81
IPR016082 Ribosomal_L30_ferredoxin-like 87 136
No external refs found!