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  5. Pp1s356_43V6

Pp1s356_43V6


Description : ubiquitin ligase e3


Gene families : OG_42_0002846 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002846_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s356_43V6
Cluster HCCA clusters: Cluster_296

Target Alias Description ECC score Gene Family Method Actions
Bradi2g03180 No alias proteolysis 6 0.04 Orthogroups_2024-Update
Cre02.g089237 No alias proteolysis 6 0.02 Orthogroups_2024-Update
Glyma.07G132300 No alias proteolysis 6 0.05 Orthogroups_2024-Update
Glyma.18G181200 No alias proteolysis 6 0.02 Orthogroups_2024-Update
HORVU3Hr1G013300.5 No alias type-I-residues E3 ubiquitin ligase *(PRT6) 0.04 Orthogroups_2024-Update
Kfl00338_0040 kfl00338_0040_v1.1 (at5g02310 : 216.0) Encodes PROTEOLYSIS6 (PRT6), a... 0.02 Orthogroups_2024-Update
Kfl00338_0050 kfl00338_0050_v1.1 (at5g02310 : 149.0) Encodes PROTEOLYSIS6 (PRT6), a... 0.02 Orthogroups_2024-Update
PSME_00008232-RA No alias (at5g02310 : 269.0) Encodes PROTEOLYSIS6 (PRT6), a... 0.02 Orthogroups_2024-Update
PSME_00008233-RA No alias (at5g02310 : 427.0) Encodes PROTEOLYSIS6 (PRT6), a... 0.03 Orthogroups_2024-Update
Seita.5G102700.1 No alias type-I-residues E3 ubiquitin ligase *(PRT6) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0046486 glycerolipid metabolic process IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
InterPro domains Description Start Stop
IPR003126 Znf_UBR 146 212
No external refs found!