- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : 40s ribosomal protein
Gene families : OG_42_0002664 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002664_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Physcomitrella release: Pp1s39_286V6 | |
| Cluster | HCCA clusters: Cluster_89 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Brara.B00154.1 | No alias | component *(eS17) of small ribosomal-subunit (SSU) proteome | 0.04 | Orthogroups_2024-Update | |
| Brara.C00178.1 | No alias | component *(eS17) of small ribosomal-subunit (SSU) proteome | 0.05 | Orthogroups_2024-Update | |
| Brara.E03000.1 | No alias | component *(eS17) of small ribosomal-subunit (SSU) proteome | 0.02 | Orthogroups_2024-Update | |
| Brara.J02711.1 | No alias | component *(eS17) of small ribosomal-subunit (SSU) proteome | 0.06 | Orthogroups_2024-Update | |
| Cre12.g498250 | No alias | Ribosomal S17 family protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.07G219500 | No alias | Ribosomal S17 family protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.10G076400 | No alias | Ribosomal S17 family protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.20G017700 | No alias | Ribosomal S17 family protein | 0.04 | Orthogroups_2024-Update | |
| HORVU1Hr1G042220.1 | No alias | component *(eS17) of small ribosomal-subunit (SSU) proteome | 0.02 | Orthogroups_2024-Update | |
| Mp8g18950.1 | No alias | component RPS17 of SSU proteome | 0.02 | Orthogroups_2024-Update | |
| Seita.9G218400.1 | No alias | component *(eS17) of small ribosomal-subunit (SSU) proteome | 0.04 | Orthogroups_2024-Update | |
| Seita.9G497100.1 | No alias | component *(eS17) of small ribosomal-subunit (SSU) proteome | 0.02 | Orthogroups_2024-Update | |
| Sobic.010G076400.1 | No alias | component *(eS17) of small ribosomal-subunit (SSU) proteome | 0.04 | Orthogroups_2024-Update | |
| Solyc11g006690 | No alias | 40S ribosomal protein S17 (AHRD V3.3 *** RS17_SOLLC) | 0.04 | Orthogroups_2024-Update | |
| Sopen05g033670 | No alias | Ribosomal S17 | 0.02 | Orthogroups_2024-Update | |
| Sopen10g032640 | No alias | Ribosomal S17 | 0.05 | Orthogroups_2024-Update | |
| Sopen11g002620 | No alias | Ribosomal S17 | 0.05 | Orthogroups_2024-Update | |
| evm.model.contig_2507.2 | No alias | (at2g05220 : 160.0) Ribosomal S17 family protein;... | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003735 | structural constituent of ribosome | IEA | InterProScan predictions |
| CC | GO:0005622 | intracellular | IEA | InterProScan predictions |
| CC | GO:0005840 | ribosome | IEA | InterProScan predictions |
| BP | GO:0006412 | translation | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008519 | ammonium transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0015298 | solute:cation antiporter activity | IEP | Predicted GO |
| MF | GO:0015299 | solute:proton antiporter activity | IEP | Predicted GO |
| BP | GO:0015696 | ammonium transport | IEP | Predicted GO |
| MF | GO:0047429 | nucleoside-triphosphate diphosphatase activity | IEP | Predicted GO |
| MF | GO:0061630 | ubiquitin protein ligase activity | IEP | Predicted GO |
| MF | GO:0061659 | ubiquitin-like protein ligase activity | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001210 | Ribosomal_S17e | 1 | 119 |
| No external refs found! |