Description : charged multivesicular body protein 2a
Gene families : OG_42_0001019 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001019_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Physcomitrella release: Pp1s52_141V6 | |
Cluster | HCCA clusters: Cluster_292 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Glyma.03G164800 | No alias | vacuolar protein sorting-associated protein 2.3 | 0.03 | Orthogroups_2024-Update | |
Kfl00147_0110 | kfl00147_0110_v1.1 | (at1g03950 : 185.0) vacuolar protein sorting-associated... | 0.04 | Orthogroups_2024-Update | |
Potri.001G170400 | No alias | SNF7 family protein | 0.02 | Orthogroups_2024-Update | |
evm.model.tig00020510.41 | No alias | (at2g06530 : 207.0) VPS2.1; CONTAINS InterPro DOMAIN/s:... | 0.01 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0007034 | vacuolar transport | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Predicted GO |
MF | GO:0003712 | transcription coregulator activity | IEP | Predicted GO |
CC | GO:0005730 | nucleolus | IEP | Predicted GO |
BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | Predicted GO |
BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
MF | GO:0008289 | lipid binding | IEP | Predicted GO |
BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
CC | GO:0016592 | mediator complex | IEP | Predicted GO |
MF | GO:0016701 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | IEP | Predicted GO |
MF | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | IEP | Predicted GO |
BP | GO:0030490 | maturation of SSU-rRNA | IEP | Predicted GO |
CC | GO:0030684 | preribosome | IEP | Predicted GO |
CC | GO:0030686 | 90S preribosome | IEP | Predicted GO |
CC | GO:0030688 | preribosome, small subunit precursor | IEP | Predicted GO |
BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
CC | GO:0044422 | organelle part | IEP | Predicted GO |
CC | GO:0044428 | nuclear part | IEP | Predicted GO |
CC | GO:0044446 | intracellular organelle part | IEP | Predicted GO |
CC | GO:0044451 | nucleoplasm part | IEP | Predicted GO |
MF | GO:0051213 | dioxygenase activity | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR005024 | Snf7_fam | 18 | 185 |
No external refs found! |