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Pp1s563_1V6


Description : pectate lyase


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s563_1V6
Cluster HCCA clusters: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
A4A49_59737 No alias putative pectate lyase 18 0.03 Orthogroups_2024-Update
Brara.H00489.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
Brara.H01597.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
LOC_Os05g22800 No alias pectate lyase precursor, putative, expressed 0.02 Orthogroups_2024-Update
MA_10437227g0010 No alias (at4g24780 : 367.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00041064-RA No alias (at1g67750 : 595.0) Pectate lyase family protein;... 0.03 Orthogroups_2024-Update
Potri.002G238800 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Pp1s409_2V6 No alias pectate lyase 0.02 Orthogroups_2024-Update
Pp1s45_65V6 No alias pectate lyase 0.03 Orthogroups_2024-Update
Solyc02g087670 No alias Pectate lyase (AHRD V3.3 *** K4BBS3_SOLLC) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP Predicted GO
CC GO:0005787 signal peptidase complex IEP Predicted GO
BP GO:0006465 signal peptide processing IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
CC GO:1905368 peptidase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002022 Pec_lyase 157 342
No external refs found!