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  5. Pp1s89_130V6

Pp1s89_130V6


Description : b-like cyclin


Gene families : OG_42_0000120 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s89_130V6
Cluster HCCA clusters: Cluster_183

Target Alias Description ECC score Gene Family Method Actions
A4A49_12698 No alias cyclin-a1-3 0.02 Orthogroups_2024-Update
Brara.C00237.1 No alias regulatory protein *(CYCB) of cell cycle 0.02 Orthogroups_2024-Update
Brara.G03427.1 No alias regulatory protein *(CYCB) of cell cycle 0.02 Orthogroups_2024-Update
Brara.K00759.1 No alias regulatory protein *(CYCB) of cell cycle 0.02 Orthogroups_2024-Update
Glyma.02G277600 No alias Cyclin family protein 0.03 Orthogroups_2024-Update
Glyma.03G123600 No alias Cyclin family protein 0.03 Orthogroups_2024-Update
Glyma.06G116100 No alias Cyclin A1;1 0.03 Orthogroups_2024-Update
Glyma.14G037100 No alias Cyclin family protein 0.03 Orthogroups_2024-Update
Glyma.14G154200 No alias Cyclin A1;1 0.03 Orthogroups_2024-Update
Glyma.19G127200 No alias Cyclin family protein 0.03 Orthogroups_2024-Update
LOC_Os01g59120 No alias cyclin, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g41100 No alias cyclin, putative, expressed 0.02 Orthogroups_2024-Update
MA_28323g0010 No alias (at5g11300 : 355.0) mitotic-like cyclin, core cell cycle... 0.02 Orthogroups_2024-Update
MA_6619g0010 No alias (at1g44110 : 409.0) Cyclin A1;1 (CYCA1;1); CONTAINS... 0.02 Orthogroups_2024-Update
PSME_00001614-RA No alias (p34800|ccn1_antma : 345.0) G2/mitotic-specific cyclin-1... 0.03 Orthogroups_2024-Update
PSME_00031546-RA No alias (at1g44110 : 410.0) Cyclin A1;1 (CYCA1;1); CONTAINS... 0.02 Orthogroups_2024-Update
Solyc11g005090 No alias cyclin A1 0.02 Orthogroups_2024-Update
Sopen10g028990 No alias Cyclin, N-terminal domain 0.02 Orthogroups_2024-Update
Sopen10g031460 No alias Cyclin, N-terminal domain 0.03 Orthogroups_2024-Update
Sopen12g030450 No alias Cyclin, N-terminal domain 0.02 Orthogroups_2024-Update
evm.model.contig_554.3 No alias (q40671|ccnb2_orysa : 240.0) G2/mitotic-specific... 0.01 Orthogroups_2024-Update
evm.model.tig00000769.38 No alias (at1g76310 : 252.0) core cell cycle genes; CYCLIN B2;4... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Predicted GO
CC GO:0000124 SAGA complex IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
CC GO:0031248 protein acetyltransferase complex IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
CC GO:0070461 SAGA-type complex IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
CC GO:1902493 acetyltransferase complex IEP Predicted GO
CC GO:1905368 peptidase complex IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004367 Cyclin_C-dom 404 527
IPR006671 Cyclin_N 276 402
No external refs found!