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Pp1s97_12V6


Description : 50s ribosomal protein l18


Gene families : OG_42_0003571 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003571_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Physcomitrella release: Pp1s97_12V6
Cluster HCCA clusters: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
143891 No alias Ribosomal L18p/L5e family protein 0.07 Orthogroups_2024-Update
A4A49_31170 No alias 50s ribosomal protein l18, chloroplastic 0.08 Orthogroups_2024-Update
Bradi1g03220 No alias Ribosomal L18p/L5e family protein 0.07 Orthogroups_2024-Update
Cre01.g052100 No alias Ribosomal L18p/L5e family protein 0.1 Orthogroups_2024-Update
GRMZM2G142097 No alias Ribosomal L18p/L5e family protein 0.04 Orthogroups_2024-Update
Glyma.09G077600 No alias Ribosomal L18p/L5e family protein 0.05 Orthogroups_2024-Update
Glyma.15G185000 No alias Ribosomal L18p/L5e family protein 0.05 Orthogroups_2024-Update
HORVU5Hr1G115340.1 No alias component *(uL18c) of large plastid ribosomal-subunit proteome 0.11 Orthogroups_2024-Update
Kfl00404_0030 kfl00404_0030_v1.1 (q8say0|rk18_orysa : 122.0) 50S ribosomal protein L18,... 0.03 Orthogroups_2024-Update
MA_7609850g0010 No alias (at1g48350 : 124.0) Ribosomal L18p/L5e family protein;... 0.06 Orthogroups_2024-Update
Potri.010G005000 No alias Ribosomal L18p/L5e family protein 0.08 Orthogroups_2024-Update
Seita.9G022000.1 No alias component *(uL18c) of large plastid ribosomal-subunit proteome 0.12 Orthogroups_2024-Update
Sobic.001G027600.1 No alias component *(uL18c) of large plastid ribosomal-subunit proteome 0.14 Orthogroups_2024-Update
Solyc12g098890 No alias 50S ribosomal protein L18 (AHRD V3.3 *** W9QXJ8_9ROSA) 0.07 Orthogroups_2024-Update
Sopen12g033640 No alias Ribosomal L18p/L5e family 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004356 glutamate-ammonia ligase activity IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006541 glutamine metabolic process IEP Predicted GO
BP GO:0006542 glutamine biosynthetic process IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016211 ammonia ligase activity IEP Predicted GO
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
MF GO:0019829 cation-transporting ATPase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0022853 active ion transmembrane transporter activity IEP Predicted GO
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Predicted GO
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP Predicted GO
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR005484 Ribosomal_L18 61 179
No external refs found!