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  5. Pp1s9_408V6

Pp1s9_408V6


Description : chloroplast 30s ribosomal protein s10


Gene families : OG_42_0006070 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006070_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Physcomitrella release: Pp1s9_408V6
Cluster HCCA clusters: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
A4A49_01110 No alias 30s ribosomal protein s10, chloroplastic 0.06 Orthogroups_2024-Update
Bradi1g71425 No alias Ribosomal protein S10p/S20e family protein 0.09 Orthogroups_2024-Update
Brara.C03451.1 No alias component *(uS10c) of small plastid ribosomal-subunit proteome 0.08 Orthogroups_2024-Update
Brara.E02799.1 No alias component *(uS10c) of small plastid ribosomal-subunit proteome 0.03 Orthogroups_2024-Update
Cre03.g195650 No alias Ribosomal protein S10p/S20e family protein 0.08 Orthogroups_2024-Update
GRMZM2G047513 No alias Ribosomal protein S10p/S20e family protein 0.05 Orthogroups_2024-Update
Glyma.08G327500 No alias Ribosomal protein S10p/S20e family protein 0.02 Orthogroups_2024-Update
Glyma.18G079900 No alias Ribosomal protein S10p/S20e family protein 0.03 Orthogroups_2024-Update
Kfl00124_0260 kfl00124_0260_v1.1 (q9m4y3|rr10_mescr : 137.0) 30S ribosomal protein S10,... 0.08 Orthogroups_2024-Update
Potri.001G364100 No alias Ribosomal protein S10p/S20e family protein 0.04 Orthogroups_2024-Update
Potri.011G092800 No alias Ribosomal protein S10p/S20e family protein 0.08 Orthogroups_2024-Update
Seita.9G505300.1 No alias component *(uS10c) of small plastid ribosomal-subunit proteome 0.04 Orthogroups_2024-Update
Sobic.001G469933.1 No alias component *(uS10c) of small plastid ribosomal-subunit proteome 0.06 Orthogroups_2024-Update
Solyc10g006030 No alias Ribosomal protein S10 (AHRD V3.3 *** A0A103Y4F5_CYNCS) 0.04 Orthogroups_2024-Update
Sopen10g001990 No alias Ribosomal protein S10p/S20e 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0010207 photosystem II assembly IEP Predicted GO
BP GO:0017006 protein-tetrapyrrole linkage IEP Predicted GO
BP GO:0017007 protein-bilin linkage IEP Predicted GO
BP GO:0017009 protein-phycocyanobilin linkage IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR027486 Ribosomal_S10_dom 97 191
No external refs found!