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  5. Solyc12g088130

Solyc12g088130


Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein (AHRD V3.3 *** AT5G10570.1)


Gene families : OG_42_0002858 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002858_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc12g088130
Cluster HCCA clusters: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Bradi1g76030 No alias beta HLH protein 93 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000782 telomere cap complex IEP Predicted GO
CC GO:0000783 nuclear telomere cap complex IEP Predicted GO
BP GO:0003333 amino acid transmembrane transport IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
BP GO:0006820 anion transport IEP Predicted GO
BP GO:0006865 amino acid transport IEP Predicted GO
BP GO:0015711 organic anion transport IEP Predicted GO
BP GO:0015849 organic acid transport IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
BP GO:0046942 carboxylic acid transport IEP Predicted GO
BP GO:0098656 anion transmembrane transport IEP Predicted GO
BP GO:1903825 organic acid transmembrane transport IEP Predicted GO
BP GO:1905039 carboxylic acid transmembrane transport IEP Predicted GO
CC GO:1990879 CST complex IEP Predicted GO
InterPro domains Description Start Stop
IPR011598 bHLH_dom 1 43
No external refs found!