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  5. Solyc01g102910

Solyc01g102910


Description : Germin family protein (AHRD V3.3 *** G7I5N4_MEDTR)


Gene families : OG_42_0000022 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000022_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g102910
Cluster HCCA clusters: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Brara.G01448.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os08g08970 No alias Cupin domain containing protein, expressed 0.04 Orthogroups_2024-Update
LOC_Os08g09040 No alias Cupin domain containing protein, expressed 0.02 Orthogroups_2024-Update
Potri.011G162200 No alias RmlC-like cupins superfamily protein 0.02 Orthogroups_2024-Update
Potri.011G162600 No alias RmlC-like cupins superfamily protein 0.02 Orthogroups_2024-Update
Potri.013G051600 No alias RmlC-like cupins superfamily protein 0.03 Orthogroups_2024-Update
Sobic.004G165300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.009G059100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g102400 No alias Germin-like protein (AHRD V1 ***- O65358_SOLTU)%3B... 0.04 Orthogroups_2024-Update
Sopen11g002900 No alias Cupin 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0045735 nutrient reservoir activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003713 transcription coactivator activity IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016872 intramolecular lyase activity IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
InterPro domains Description Start Stop
IPR006045 Cupin_1 65 216
No external refs found!