evm.model.contig_2077.13

Description : (at2g13370 : 595.0) chromatin remodeling 5 (CHR5); FUNCTIONS IN: chromatin binding, helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1); Has 38529 Blast hits to 28045 proteins in 2467 species: Archae - 189; Bacteria - 9973; Metazoa - 8887; Fungi - 6205; Plants - 2508; Viruses - 447; Other Eukaryotes - 10320 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 419.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1190.0) & (original description: no original description)

Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Porphyridium release: evm.model.contig_2077.13
Cluster	HCCA clusters: Cluster_49

Target	Alias	Description	ECC score	Gene Family Method
AC235535.1_FG001	No alias	chromatin-remodeling protein 11	0.01	Orthogroups_2024-Update
At2g25170	No alias	chromatin remodeling factor CHD3 (PICKLE)...	0.02	Orthogroups_2024-Update
At3g06400	No alias	Chromatin-remodeling complex ATPase...	0.02	Orthogroups_2024-Update
Bradi1g18910	No alias	chromatin remodeling 5	0.01	Orthogroups_2024-Update
GRMZM2G010342	No alias	chromatin remodeling 5	0.01	Orthogroups_2024-Update
GRMZM2G316191	No alias	chromatin remodeling 4	0.01	Orthogroups_2024-Update
Glyma.02G281000	No alias	chromatin remodeling 5	0.01	Orthogroups_2024-Update
Glyma.04G062400	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.01	Orthogroups_2024-Update
Glyma.05G131500	No alias	chromatin remodeling 4	0.02	Orthogroups_2024-Update
Glyma.06G063400	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.02	Orthogroups_2024-Update
Glyma.07G252100	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.02	Orthogroups_2024-Update
Glyma.08G086100	No alias	chromatin remodeling 4	0.02	Orthogroups_2024-Update
Glyma.11G004100	No alias	Homeotic gene regulator	0.02	Orthogroups_2024-Update
Glyma.17G023600	No alias	chromatin remodeling factor17	0.02	Orthogroups_2024-Update
HORVU1Hr1G019290.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Potri.008G205600	No alias	chromatin remodeling factor17	0.01	Orthogroups_2024-Update
Pp1s360_39V6	No alias	syd atpase chromatin binding	0.02	Orthogroups_2024-Update
Seita.4G112400.1	No alias	SMARCA component *(SYD/BRM/MINU)	0.02	Orthogroups_2024-Update
Sopen02g017710	No alias	SNF2 family N-terminal domain	0.02	Orthogroups_2024-Update
evm.model.tig00000802.67	No alias	(at3g06010 : 465.0) Encodes AtCHR12, a SNF2/Brahma-type...	0.02	Orthogroups_2024-Update
evm.model.tig00000983.26	No alias	(at2g13370 : 651.0) chromatin remodeling 5 (CHR5);...	0.02	Orthogroups_2024-Update
evm.model.tig00020960.24	No alias	(at2g13370 : 202.0) chromatin remodeling 5 (CHR5);...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	Predicted GO
MF	GO:0003690	double-stranded DNA binding	IEP	Predicted GO
MF	GO:0003885	D-arabinono-1,4-lactone oxidase activity	IEP	Predicted GO
MF	GO:0003916	DNA topoisomerase activity	IEP	Predicted GO
MF	GO:0003917	DNA topoisomerase type I activity	IEP	Predicted GO
MF	GO:0003918	DNA topoisomerase type II (ATP-hydrolyzing) activity	IEP	Predicted GO
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Predicted GO
MF	GO:0005216	ion channel activity	IEP	Predicted GO
MF	GO:0005337	nucleoside transmembrane transporter activity	IEP	Predicted GO
BP	GO:0006259	DNA metabolic process	IEP	Predicted GO
BP	GO:0006265	DNA topological change	IEP	Predicted GO
BP	GO:0006996	organelle organization	IEP	Predicted GO
MF	GO:0008146	sulfotransferase activity	IEP	Predicted GO
MF	GO:0008897	holo-[acyl-carrier-protein] synthase activity	IEP	Predicted GO
MF	GO:0015075	ion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015267	channel activity	IEP	Predicted GO
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015858	nucleoside transport	IEP	Predicted GO
BP	GO:0015931	nucleobase-containing compound transport	IEP	Predicted GO
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	Predicted GO
MF	GO:0016780	phosphotransferase activity, for other substituted phosphate groups	IEP	Predicted GO
MF	GO:0016782	transferase activity, transferring sulfur-containing groups	IEP	Predicted GO
MF	GO:0016899	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor	IEP	Predicted GO
MF	GO:0016987	sigma factor activity	IEP	Predicted GO
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Predicted GO
MF	GO:0022803	passive transmembrane transporter activity	IEP	Predicted GO
MF	GO:0022838	substrate-specific channel activity	IEP	Predicted GO
MF	GO:0022857	transmembrane transporter activity	IEP	Predicted GO
CC	GO:0030915	Smc5-Smc6 complex	IEP	Predicted GO
MF	GO:0043015	gamma-tubulin binding	IEP	Predicted GO
BP	GO:0051276	chromosome organization	IEP	Predicted GO
MF	GO:0061505	DNA topoisomerase II activity	IEP	Predicted GO
BP	GO:0071103	DNA conformation change	IEP	Predicted GO
CC	GO:0106068	SUMO ligase complex	IEP	Predicted GO
BP	GO:1901264	carbohydrate derivative transport	IEP	Predicted GO
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	Predicted GO
BP	GO:1901642	nucleoside transmembrane transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	1127	1237
IPR000330	SNF2_N	804	1092
IPR023780	Chromo_domain	683	745
IPR025260	DUF4208	1862	1941

External Links

No external refs found!

evm.model.contig_2077.13

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation