evm.model.contig_2299.5

Description : (at3g07050 : 275.0) GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917), GNL3L/Grn1 putative GTPase (InterPro:IPR014813); BEST Arabidopsis thaliana protein match is: GTP-binding family protein (TAIR:AT1G52980.1); Has 11622 Blast hits to 10428 proteins in 1861 species: Archae - 158; Bacteria - 5948; Metazoa - 1715; Fungi - 910; Plants - 502; Viruses - 28; Other Eukaryotes - 2361 (source: NCBI BLink). & (reliability: 550.0) & (original description: no original description)

Gene families : OG_42_0003992 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003992_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Porphyridium release: evm.model.contig_2299.5
Cluster	HCCA clusters: Cluster_19

Target	Alias	Description	ECC score	Gene Family Method
At3g07050	No alias	Guanine nucleotide-binding protein-like NSN1...	0.02	Orthogroups_2024-Update
Bradi1g31710	No alias	GTP-binding family protein	0.1	Orthogroups_2024-Update
Bradi1g76700	No alias	GTP-binding family protein	0.07	Orthogroups_2024-Update
Brara.A03628.1	No alias	regulatory GTPase (NUG1/NSN1) of LSU processome	0.04	Orthogroups_2024-Update
Brara.C03191.1	No alias	regulatory GTPase (NUG1/NSN1) of LSU processome	0.09	Orthogroups_2024-Update
Brara.E03243.1	No alias	regulatory GTPase (NUG1/NSN1) of LSU processome	0.02	Orthogroups_2024-Update
Cre12.g533050	No alias	GTP-binding family protein	0.14	Orthogroups_2024-Update
Glyma.10G122200	No alias	GTP-binding family protein	0.06	Orthogroups_2024-Update
Glyma.20G073900	No alias	GTP-binding family protein	0.02	Orthogroups_2024-Update
HORVU2Hr1G016650.1	No alias	regulatory GTPase (NUG1/NSN1) of LSU processome	0.07	Orthogroups_2024-Update
Kfl00223_0170	kfl00223_0170_v1....	(at3g07050 : 427.0) GTP-binding family protein;...	0.11	Orthogroups_2024-Update
Mp8g17210.1	No alias	NUG1/NSN1 LSU processome regulatory GTPase	0.03	Orthogroups_2024-Update
Potri.002G241100	No alias	GTP-binding family protein	0.04	Orthogroups_2024-Update
Pp1s91_142V6	No alias	guanine nucleotide binding protein 3	0.08	Orthogroups_2024-Update
Seita.9G087300.1	No alias	regulatory GTPase (NUG1/NSN1) of LSU processome	0.09	Orthogroups_2024-Update
Sobic.001G177100.1	No alias	regulatory GTPase (NUG1/NSN1) of LSU processome	0.07	Orthogroups_2024-Update
Solyc09g061430	No alias	nuclear GTPase DQ304482	0.04	Orthogroups_2024-Update
Sopen06g034900	No alias	50S ribosome-binding GTPase	0.04	Orthogroups_2024-Update
Sopen09g024250	No alias	GNL3L/Grn1 putative GTPase	0.07	Orthogroups_2024-Update
evm.model.tig00001215.14	No alias	(at3g07050 : 206.0) GTP-binding family protein;...	0.09	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0001882	nucleoside binding	None	Extended
MF	GO:0001883	purine nucleoside binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	InterProScan predictions
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032549	ribonucleoside binding	None	Extended
MF	GO:0032550	purine ribonucleoside binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0004455	ketol-acid reductoisomerase activity	IEP	Predicted GO
MF	GO:0004749	ribose phosphate diphosphokinase activity	IEP	Predicted GO
CC	GO:0005634	nucleus	IEP	Predicted GO
CC	GO:0005730	nucleolus	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006334	nucleosome assembly	IEP	Predicted GO
BP	GO:0006364	rRNA processing	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
MF	GO:0008134	transcription factor binding	IEP	Predicted GO
BP	GO:0008152	metabolic process	IEP	Predicted GO
BP	GO:0009081	branched-chain amino acid metabolic process	IEP	Predicted GO
BP	GO:0009082	branched-chain amino acid biosynthetic process	IEP	Predicted GO
BP	GO:0009987	cellular process	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
BP	GO:0016072	rRNA metabolic process	IEP	Predicted GO
MF	GO:0016706	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	IEP	Predicted GO
MF	GO:0019842	vitamin binding	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
BP	GO:0030490	maturation of SSU-rRNA	IEP	Predicted GO
MF	GO:0030515	snoRNA binding	IEP	Predicted GO
MF	GO:0031406	carboxylic acid binding	IEP	Predicted GO
MF	GO:0031418	L-ascorbic acid binding	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0034728	nucleosome organization	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
MF	GO:0043177	organic acid binding	IEP	Predicted GO
CC	GO:0043226	organelle	IEP	Predicted GO
CC	GO:0043227	membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043229	intracellular organelle	IEP	Predicted GO
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
BP	GO:0044237	cellular metabolic process	IEP	Predicted GO
CC	GO:0044424	intracellular part	IEP	Predicted GO
CC	GO:0044428	nuclear part	IEP	Predicted GO
CC	GO:0044464	cell part	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
MF	GO:0048029	monosaccharide binding	IEP	Predicted GO
MF	GO:0048037	cofactor binding	IEP	Predicted GO
MF	GO:0050662	coenzyme binding	IEP	Predicted GO
BP	GO:0055114	oxidation-reduction process	IEP	Predicted GO
BP	GO:0065004	protein-DNA complex assembly	IEP	Predicted GO
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predicted GO
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR006073	GTP_binding_domain	268	337
IPR014813	Gnl3_N_dom	12	78

External Links

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evm.model.contig_2299.5

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation