evm.model.contig_4408.23

Description : (at2g40360 : 214.0) Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: rRNA processing; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), BOP1, N-terminal (InterPro:IPR012953), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: HEAT repeat ;WD domain, G-beta repeat protein protein (TAIR:AT5G01770.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 428.0) & (original description: no original description)

Gene families : OG_42_0004523 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004523_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Porphyridium release: evm.model.contig_4408.23
Cluster	HCCA clusters: Cluster_19

Target	Alias	Description	ECC score	Gene Family Method
A4A49_09851	No alias	ribosome biogenesis protein bop1-like protein	0.02	Orthogroups_2024-Update
At2g40360	No alias	Ribosome biogenesis protein BOP1 homolog...	0.03	Orthogroups_2024-Update
Bradi3g39580	No alias	Transducin/WD40 repeat-like superfamily protein	0.1	Orthogroups_2024-Update
Bradi3g60762	No alias	Transducin/WD40 repeat-like superfamily protein	0.05	Orthogroups_2024-Update
Brara.C02279.1	No alias	component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW) complex	0.07	Orthogroups_2024-Update
Cre10.g417950	No alias	Transducin/WD40 repeat-like superfamily protein	0.12	Orthogroups_2024-Update
Glyma.12G167800	No alias	Transducin/WD40 repeat-like superfamily protein	0.05	Orthogroups_2024-Update
Kfl00363_0120	kfl00363_0120_v1.1	(at2g40360 : 713.0) Transducin/WD40 repeat-like...	0.08	Orthogroups_2024-Update
MA_10426057g0010	No alias	(at2g40360 : 750.0) Transducin/WD40 repeat-like...	0.02	Orthogroups_2024-Update
Mp2g26050.1	No alias	component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex	0.01	Orthogroups_2024-Update
Potri.004G222500	No alias	Transducin/WD40 repeat-like superfamily protein	0.03	Orthogroups_2024-Update
Pp1s3_332V6	No alias	block of proliferation 1	0.05	Orthogroups_2024-Update
Seita.6G140100.1	No alias	component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW) complex	0.08	Orthogroups_2024-Update
Sobic.003G156500.1	No alias	component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW) complex	0.08	Orthogroups_2024-Update
Solyc01g103740	No alias	No description available	0.03	Orthogroups_2024-Update
Sopen01g046140	No alias	BOP1NT (NUC169) domain	0.08	Orthogroups_2024-Update
evm.model.tig00000382.38	No alias	(at2g40360 : 570.0) Transducin/WD40 repeat-like...	0.07	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	InterProScan predictions
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predicted GO
MF	GO:0003674	molecular_function	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0004386	helicase activity	IEP	Predicted GO
MF	GO:0004488	methylenetetrahydrofolate dehydrogenase (NADP+) activity	IEP	Predicted GO
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Predicted GO
MF	GO:0005488	binding	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
CC	GO:0005634	nucleus	IEP	Predicted GO
CC	GO:0005730	nucleolus	IEP	Predicted GO
BP	GO:0006082	organic acid metabolic process	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
MF	GO:0008168	methyltransferase activity	IEP	Predicted GO
MF	GO:0008536	Ran GTPase binding	IEP	Predicted GO
MF	GO:0016706	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	IEP	Predicted GO
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Predicted GO
BP	GO:0019752	carboxylic acid metabolic process	IEP	Predicted GO
MF	GO:0019899	enzyme binding	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
BP	GO:0030163	protein catabolic process	IEP	Predicted GO
BP	GO:0030490	maturation of SSU-rRNA	IEP	Predicted GO
MF	GO:0030515	snoRNA binding	IEP	Predicted GO
MF	GO:0031406	carboxylic acid binding	IEP	Predicted GO
MF	GO:0031418	L-ascorbic acid binding	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
BP	GO:0043038	amino acid activation	IEP	Predicted GO
BP	GO:0043039	tRNA aminoacylation	IEP	Predicted GO
MF	GO:0043177	organic acid binding	IEP	Predicted GO
CC	GO:0043226	organelle	IEP	Predicted GO
CC	GO:0043227	membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043229	intracellular organelle	IEP	Predicted GO
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Predicted GO
BP	GO:0043436	oxoacid metabolic process	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
MF	GO:0048029	monosaccharide binding	IEP	Predicted GO
MF	GO:0097159	organic cyclic compound binding	IEP	Predicted GO
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predicted GO
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predicted GO
MF	GO:1901363	heterocyclic compound binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR012953	BOP1_N_dom	4	268

External Links

No external refs found!

evm.model.contig_4408.23

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation