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  5. evm.model.contig_4446.12

evm.model.contig_4446.12


Description : (at3g21540 : 426.0) transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: nucleolus, heterotrimeric G-protein complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Small-subunit processome, Utp12 (InterPro:IPR007148), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT5G16750.1); Has 119158 Blast hits to 33008 proteins in 859 species: Archae - 80; Bacteria - 11912; Metazoa - 49564; Fungi - 26721; Plants - 15098; Viruses - 0; Other Eukaryotes - 15783 (source: NCBI BLink). & (reliability: 852.0) & (original description: no original description)


Gene families : OG_42_0005593 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005593_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_4446.12
Cluster HCCA clusters: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
99969 No alias transducin family protein / WD-40 repeat family protein 0.02 Orthogroups_2024-Update
AC209858.4_FG002 No alias transducin family protein / WD-40 repeat family protein 0.05 Orthogroups_2024-Update
At3g21540 No alias Transducin family protein / WD-40 repeat family protein... 0.07 Orthogroups_2024-Update
Bradi1g74940 No alias transducin family protein / WD-40 repeat family protein 0.06 Orthogroups_2024-Update
Brara.A01985.1 No alias SSU processome assembly factor *(UTP12) 0.08 Orthogroups_2024-Update
Cre10.g438700 No alias transducin family protein / WD-40 repeat family protein 0.12 Orthogroups_2024-Update
Glyma.03G186500 No alias transducin family protein / WD-40 repeat family protein 0.05 Orthogroups_2024-Update
HORVU4Hr1G083410.1 No alias SSU processome assembly factor *(UTP12) 0.05 Orthogroups_2024-Update
Kfl00065_0230 kfl00065_0230_v1.1 (at3g21540 : 612.0) transducin family protein / WD-40... 0.03 Orthogroups_2024-Update
Mp2g05570.1 No alias SSU processome assembly factor (UTP12) 0.02 Orthogroups_2024-Update
PSME_00009688-RA No alias (at3g21540 : 120.0) transducin family protein / WD-40... 0.01 Orthogroups_2024-Update
Potri.006G121100 No alias transducin family protein / WD-40 repeat family protein 0.07 Orthogroups_2024-Update
Seita.9G537800.1 No alias SSU processome assembly factor *(UTP12) 0.08 Orthogroups_2024-Update
Sobic.001G501400.1 No alias SSU processome assembly factor *(UTP12) 0.06 Orthogroups_2024-Update
Solyc10g039190 No alias transducin family protein / WD-40 repeat family protein... 0.1 Orthogroups_2024-Update
Sopen10g012250 No alias WD domain, G-beta repeat 0.07 Orthogroups_2024-Update
evm.model.tig00021721.26 No alias (at3g21540 : 312.0) transducin family protein / WD-40... 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0004455 ketol-acid reductoisomerase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
BP GO:0009081 branched-chain amino acid metabolic process IEP Predicted GO
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
MF GO:0031418 L-ascorbic acid binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0048029 monosaccharide binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 84 109
IPR001680 WD40_repeat 223 258
IPR001680 WD40_repeat 560 598
IPR001680 WD40_repeat 753 784
IPR001680 WD40_repeat 667 699
IPR001680 WD40_repeat 136 170
IPR001680 WD40_repeat 474 504
IPR007148 SSU_processome_Utp12 901 1003
No external refs found!