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  5. evm.model.contig_450.3

evm.model.contig_450.3


Description : (at3g62310 : 264.0) RNA helicase family protein; FUNCTIONS IN: RNA helicase activity, helicase activity, ATP binding, nucleic acid binding, ATP-dependent helicase activity; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase family protein (TAIR:AT2G47250.1); Has 10517 Blast hits to 9531 proteins in 1639 species: Archae - 4; Bacteria - 3473; Metazoa - 2472; Fungi - 1291; Plants - 883; Viruses - 640; Other Eukaryotes - 1754 (source: NCBI BLink). & (gnl|cdd|68872 : 106.0) no description available & (reliability: 520.0) & (original description: no original description)


Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_450.3
Cluster HCCA clusters: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
414740 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
429199 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
At3g62310 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Orthogroups_2024-Update
Bradi3g59870 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Bradi4g16730 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Glyma.15G031900 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Pp1s43_55V6 No alias deah (asp-glu-ala-his) box polypeptide 16 0.02 Orthogroups_2024-Update
Solyc01g079250 No alias RNA helicase DEAH-box2 0.02 Orthogroups_2024-Update
Sopen01g053030 No alias Oligonucleotide/oligosaccharide-binding (OB)-fold 0.02 Orthogroups_2024-Update
Sopen07g019130 No alias Oligonucleotide/oligosaccharide-binding (OB)-fold 0.02 Orthogroups_2024-Update
Sopen12g030910 No alias Helicase associated domain (HA2) 0.02 Orthogroups_2024-Update
evm.model.tig00000796.23 No alias (at3g26560 : 485.0) ATP-dependent RNA helicase,... 0.02 Orthogroups_2024-Update
evm.model.tig00000842.2 No alias (at3g26560 : 568.0) ATP-dependent RNA helicase,... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004386 helicase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Predicted GO
BP GO:0000077 DNA damage checkpoint IEP Predicted GO
MF GO:0003873 6-phosphofructo-2-kinase activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004003 ATP-dependent DNA helicase activity IEP Predicted GO
MF GO:0004359 glutaminase activity IEP Predicted GO
BP GO:0006000 fructose metabolic process IEP Predicted GO
BP GO:0006066 alcohol metabolic process IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006643 membrane lipid metabolic process IEP Predicted GO
BP GO:0006664 glycolipid metabolic process IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
BP GO:0008203 cholesterol metabolic process IEP Predicted GO
MF GO:0008443 phosphofructokinase activity IEP Predicted GO
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP Predicted GO
MF GO:0008915 lipid-A-disaccharide synthase activity IEP Predicted GO
BP GO:0009245 lipid A biosynthetic process IEP Predicted GO
BP GO:0009247 glycolipid biosynthetic process IEP Predicted GO
BP GO:0016042 lipid catabolic process IEP Predicted GO
BP GO:0016125 sterol metabolic process IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
MF GO:0019200 carbohydrate kinase activity IEP Predicted GO
CC GO:0030896 checkpoint clamp complex IEP Predicted GO
BP GO:0031570 DNA integrity checkpoint IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0042816 vitamin B6 metabolic process IEP Predicted GO
BP GO:0042819 vitamin B6 biosynthetic process IEP Predicted GO
BP GO:0042822 pyridoxal phosphate metabolic process IEP Predicted GO
BP GO:0042823 pyridoxal phosphate biosynthetic process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
BP GO:0046184 aldehyde biosynthetic process IEP Predicted GO
BP GO:0046467 membrane lipid biosynthetic process IEP Predicted GO
BP GO:0046493 lipid A metabolic process IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:1901269 lipooligosaccharide metabolic process IEP Predicted GO
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Predicted GO
BP GO:1901615 organic hydroxy compound metabolic process IEP Predicted GO
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Predicted GO
BP GO:1902652 secondary alcohol metabolic process IEP Predicted GO
BP GO:1903509 liposaccharide metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001650 Helicase_C 712 804
IPR011545 DEAD/DEAH_box_helicase_dom 423 594
IPR007502 Helicase-assoc_dom 867 964
No external refs found!