- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : (at4g16700 : 208.0) Encodes a mitochondrial phosphatidylserine decarboxylase. Expressed mainly in roots and flowers.; phosphatidylserine decarboxylase 1 (PSD1); FUNCTIONS IN: phosphatidylserine decarboxylase activity; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylserine decarboxylase-related (InterPro:IPR003817), Phosphatidylserine decarboxylase (InterPro:IPR005221); Has 2996 Blast hits to 2984 proteins in 1194 species: Archae - 0; Bacteria - 2050; Metazoa - 197; Fungi - 312; Plants - 68; Viruses - 0; Other Eukaryotes - 369 (source: NCBI BLink). & (reliability: 416.0) & (original description: no original description)
Gene families : OG_42_0006967 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006967_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Porphyridium release: evm.model.contig_462.13 | |
| Cluster | HCCA clusters: Cluster_58 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004609 | phosphatidylserine decarboxylase activity | IEA | InterProScan predictions |
| BP | GO:0008654 | phospholipid biosynthetic process | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0002097 | tRNA wobble base modification | IEP | Predicted GO |
| BP | GO:0002098 | tRNA wobble uridine modification | IEP | Predicted GO |
| MF | GO:0005216 | ion channel activity | IEP | Predicted GO |
| MF | GO:0005244 | voltage-gated ion channel activity | IEP | Predicted GO |
| MF | GO:0005247 | voltage-gated chloride channel activity | IEP | Predicted GO |
| MF | GO:0005253 | anion channel activity | IEP | Predicted GO |
| MF | GO:0005254 | chloride channel activity | IEP | Predicted GO |
| BP | GO:0006400 | tRNA modification | IEP | Predicted GO |
| BP | GO:0006766 | vitamin metabolic process | IEP | Predicted GO |
| BP | GO:0006767 | water-soluble vitamin metabolic process | IEP | Predicted GO |
| BP | GO:0006771 | riboflavin metabolic process | IEP | Predicted GO |
| BP | GO:0006821 | chloride transport | IEP | Predicted GO |
| MF | GO:0008308 | voltage-gated anion channel activity | IEP | Predicted GO |
| MF | GO:0008509 | anion transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0008531 | riboflavin kinase activity | IEP | Predicted GO |
| BP | GO:0009110 | vitamin biosynthetic process | IEP | Predicted GO |
| BP | GO:0009231 | riboflavin biosynthetic process | IEP | Predicted GO |
| MF | GO:0015103 | inorganic anion transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0015108 | chloride transmembrane transporter activity | IEP | Predicted GO |
| BP | GO:0015698 | inorganic anion transport | IEP | Predicted GO |
| MF | GO:0022832 | voltage-gated channel activity | IEP | Predicted GO |
| MF | GO:0022836 | gated channel activity | IEP | Predicted GO |
| MF | GO:0022838 | substrate-specific channel activity | IEP | Predicted GO |
| MF | GO:0022839 | ion gated channel activity | IEP | Predicted GO |
| CC | GO:0033588 | Elongator holoenzyme complex | IEP | Predicted GO |
| BP | GO:0042364 | water-soluble vitamin biosynthetic process | IEP | Predicted GO |
| BP | GO:0042726 | flavin-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0042727 | flavin-containing compound biosynthetic process | IEP | Predicted GO |
| MF | GO:0070569 | uridylyltransferase activity | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR003817 | PS_Dcarbxylase | 108 | 363 |
| No external refs found! |