1. Home
  2. Species
  3. Porphyridium purpureum
  4. Sequence
  5. evm.model.contig_554.3

evm.model.contig_554.3


Description : (q40671|ccnb2_orysa : 240.0) G2/mitotic-specific cyclin-2 (B-like cyclin) (CycOs2) - Oryza sativa (Rice) & (at4g35620 : 239.0) Cyclin B2;2 (CYCB2;2); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin B2;1 (TAIR:AT2G17620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 478.0) & (original description: no original description)


Gene families : OG_42_0000120 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_554.3
Cluster HCCA clusters: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
230742 No alias CYCLIN B2;4 0.04 Orthogroups_2024-Update
97411 No alias Cyclin A1;1 0.04 Orthogroups_2024-Update
A4A49_12698 No alias cyclin-a1-3 0.03 Orthogroups_2024-Update
A4A49_20167 No alias cyclin-b2-4 0.03 Orthogroups_2024-Update
A4A49_35953 No alias g2mitotic-specific cyclin s13-6 0.04 Orthogroups_2024-Update
A4A49_40931 No alias g2mitotic-specific cyclin s13-6 0.02 Orthogroups_2024-Update
At1g20590 No alias Cyclin-B2-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM91] 0.03 Orthogroups_2024-Update
At1g34460 No alias CYCLIN B1;5 [Source:TAIR;Acc:AT1G34460] 0.02 Orthogroups_2024-Update
At1g44110 No alias CYCA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0H5] 0.03 Orthogroups_2024-Update
At1g76310 No alias CYCLIN B2;4 [Source:TAIR;Acc:AT1G76310] 0.04 Orthogroups_2024-Update
At2g26760 No alias CYCB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VPU5] 0.03 Orthogroups_2024-Update
At4g35620 No alias Cyclin-B2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39070] 0.04 Orthogroups_2024-Update
At5g11300 No alias Cyclin-A2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q147G5] 0.01 Orthogroups_2024-Update
Brara.B00199.1 No alias regulatory protein *(CYCB) of cell cycle 0.06 Orthogroups_2024-Update
Brara.C00237.1 No alias regulatory protein *(CYCB) of cell cycle 0.05 Orthogroups_2024-Update
Brara.E01867.1 No alias regulatory protein *(TAM) involved in metaphase to... 0.06 Orthogroups_2024-Update
Brara.F02538.1 No alias regulatory protein *(CYCB) of cell cycle 0.02 Orthogroups_2024-Update
Brara.G00692.1 No alias regulatory protein *(CYCB) of cell cycle 0.04 Orthogroups_2024-Update
Brara.G03427.1 No alias regulatory protein *(CYCB) of cell cycle 0.02 Orthogroups_2024-Update
Brara.K00759.1 No alias regulatory protein *(CYCB) of cell cycle 0.03 Orthogroups_2024-Update
Glyma.01G159700 No alias Cyclin B2;3 0.04 Orthogroups_2024-Update
Glyma.02G277600 No alias Cyclin family protein 0.07 Orthogroups_2024-Update
Glyma.03G123600 No alias Cyclin family protein 0.06 Orthogroups_2024-Update
Glyma.04G001100 No alias Cyclin B2;3 0.04 Orthogroups_2024-Update
Glyma.04G043600 No alias Cyclin A3;1 0.02 Orthogroups_2024-Update
Glyma.04G071600 No alias mitotic-like cyclin 3B from Arabidopsis 0.04 Orthogroups_2024-Update
Glyma.04G246600 No alias Cyclin A1;1 0.02 Orthogroups_2024-Update
Glyma.06G000600 No alias Cyclin B2;3 0.02 Orthogroups_2024-Update
Glyma.06G043900 No alias CYCLIN A3;4 0.04 Orthogroups_2024-Update
Glyma.06G072900 No alias mitotic-like cyclin 3B from Arabidopsis 0.02 Orthogroups_2024-Update
Glyma.06G116100 No alias Cyclin A1;1 0.06 Orthogroups_2024-Update
Glyma.07G034100 No alias Cyclin A2;4 0.04 Orthogroups_2024-Update
Glyma.08G234900 No alias cyclin b3;1 0.03 Orthogroups_2024-Update
Glyma.13G031500 No alias Cyclin A1;1 0.02 Orthogroups_2024-Update
Glyma.14G037100 No alias Cyclin family protein 0.06 Orthogroups_2024-Update
Glyma.19G127200 No alias Cyclin family protein 0.07 Orthogroups_2024-Update
Kfl00112_0070 kfl00112_0070_v1.... (at1g80370 : 326.0) Cyclin A2;4 (CYCA2;4); CONTAINS... 0.03 Orthogroups_2024-Update
Kfl00560_0010 kfl00560_0010_v1.1 (at1g76310 : 298.0) core cell cycle genes; CYCLIN B2;4... 0.05 Orthogroups_2024-Update
LOC_Os03g41100 No alias cyclin, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g47580 No alias cyclin, putative, expressed 0.01 Orthogroups_2024-Update
MA_28323g0010 No alias (at5g11300 : 355.0) mitotic-like cyclin, core cell cycle... 0.05 Orthogroups_2024-Update
MA_6619g0010 No alias (at1g44110 : 409.0) Cyclin A1;1 (CYCA1;1); CONTAINS... 0.06 Orthogroups_2024-Update
MA_88982g0010 No alias (at5g11300 : 380.0) mitotic-like cyclin, core cell cycle... 0.04 Orthogroups_2024-Update
Mp5g10030.1 No alias cyclin (CYCB) 0.04 Orthogroups_2024-Update
PSME_00001614-RA No alias (p34800|ccn1_antma : 345.0) G2/mitotic-specific cyclin-1... 0.02 Orthogroups_2024-Update
PSME_00031489-RA No alias (at5g11300 : 338.0) mitotic-like cyclin, core cell cycle... 0.01 Orthogroups_2024-Update
PSME_00031546-RA No alias (at1g44110 : 410.0) Cyclin A1;1 (CYCA1;1); CONTAINS... 0.03 Orthogroups_2024-Update
Potri.001G177100 No alias Cyclin A2;4 0.02 Orthogroups_2024-Update
Potri.002G010000 No alias CYCLIN B2;4 0.02 Orthogroups_2024-Update
Potri.005G181400 No alias Cyclin A1;1 0.02 Orthogroups_2024-Update
Potri.006G035200 No alias Cyclin family protein 0.02 Orthogroups_2024-Update
Potri.009G165800 No alias CYCLIN B2;4 0.02 Orthogroups_2024-Update
Potri.016G033000 No alias Cyclin family protein 0.01 Orthogroups_2024-Update
Pp1s271_10V6 No alias ccb15_orysj ame: full=cyclin-b1-5 ame: full=g2... 0.03 Orthogroups_2024-Update
Pp1s642_3V6 No alias n-terminal domain containing expressed 0.01 Orthogroups_2024-Update
Pp1s89_130V6 No alias b-like cyclin 0.01 Orthogroups_2024-Update
Solyc01g009040 No alias cyclinB1_4 0.07 Orthogroups_2024-Update
Solyc02g082820 No alias cyclin B2 0.02 Orthogroups_2024-Update
Solyc03g032190 No alias cyclinB2_7 0.06 Orthogroups_2024-Update
Solyc03g120440 No alias cyclin A2_1 0.04 Orthogroups_2024-Update
Solyc04g078310 No alias cyclin A3_1 0.02 Orthogroups_2024-Update
Solyc04g082430 No alias cyclinB2_4 0.05 Orthogroups_2024-Update
Solyc06g065680 No alias cyclin A2 0.05 Orthogroups_2024-Update
Solyc07g066660 No alias cyclinB3_1 0.07 Orthogroups_2024-Update
Solyc10g078330 No alias B-type cyclin 0.05 Orthogroups_2024-Update
Solyc10g080950 No alias cyclinB1_2 0.07 Orthogroups_2024-Update
Solyc11g005090 No alias cyclin A1 0.07 Orthogroups_2024-Update
Solyc12g088470 No alias cyclin A3_4 0.03 Orthogroups_2024-Update
Solyc12g088500 No alias cyclin A3_5 0.01 Orthogroups_2024-Update
Solyc12g088530 No alias cyclin A3.1 0.01 Orthogroups_2024-Update
Sopen01g004530 No alias Cyclin, N-terminal domain 0.07 Orthogroups_2024-Update
Sopen03g006030 No alias Cyclin, N-terminal domain 0.04 Orthogroups_2024-Update
Sopen03g039320 No alias Cyclin, N-terminal domain 0.01 Orthogroups_2024-Update
Sopen04g036020 No alias Cyclin, N-terminal domain 0.07 Orthogroups_2024-Update
Sopen10g028990 No alias Cyclin, N-terminal domain 0.02 Orthogroups_2024-Update
Sopen10g031460 No alias Cyclin, N-terminal domain 0.05 Orthogroups_2024-Update
evm.model.tig00000076.67 No alias (at1g44110 : 156.0) Cyclin A1;1 (CYCA1;1); CONTAINS... 0.05 Orthogroups_2024-Update
evm.model.tig00000769.38 No alias (at1g76310 : 252.0) core cell cycle genes; CYCLIN B2;4... 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
CC GO:0000776 kinetochore IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
BP GO:0007059 chromosome segregation IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
CC GO:0031262 Ndc80 complex IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0051301 cell division IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR006671 Cyclin_N 159 284
IPR004367 Cyclin_C-dom 287 405
No external refs found!