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  5. evm.model.contig_707.2

evm.model.contig_707.2


Description : (at5g47010 : 1048.0) Required for nonsense-mediated mRNA decay. Involved in RNA interference. lba1 mutants has reduced sugar-induced expression of Atb- amylase, is hypersensitive to glucose and abscisic acid and resistant to mannose, and shows early flowering, short day-sensitive growth, and seed germination phenotypes.; LOW-LEVEL BETA-AMYLASE 1 (LBA1); FUNCTIONS IN: in 6 functions; INVOLVED IN: sugar mediated signaling pathway, RNA interference, nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, response to sucrose stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), RNA helicase UPF1, UPF2-interacting domain (InterPro:IPR018999); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1); Has 9640 Blast hits to 8330 proteins in 1330 species: Archae - 182; Bacteria - 2840; Metazoa - 3001; Fungi - 1369; Plants - 807; Viruses - 148; Other Eukaryotes - 1293 (source: NCBI BLink). & (reliability: 2096.0) & (original description: no original description)


Gene families : OG_42_0003239 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003239_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_707.2
Cluster HCCA clusters: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
A4A49_15128 No alias regulator of nonsense transcripts 1-like protein 0.01 Orthogroups_2024-Update
Cre03.g150350 No alias P-loop containing nucleoside triphosphate hydrolases... 0.01 Orthogroups_2024-Update
GRMZM2G035020 No alias RNA helicase, putative 0.02 Orthogroups_2024-Update
GRMZM2G076730 No alias RNA helicase, putative 0.02 Orthogroups_2024-Update
Seita.2G322200.1 No alias Nonsense-Mediated mRNA Decay effector protein *(UPF1) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0004386 helicase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0005737 cytoplasm IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
CC GO:0019008 molybdopterin synthase complex IEP Predicted GO
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0043545 molybdopterin cofactor metabolic process IEP Predicted GO
BP GO:0051189 prosthetic group metabolic process IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
InterPro domains Description Start Stop
IPR018999 RNA-helicase_UPF1_UPF2-interct 24 174
No external refs found!