110201

Description : RNA polymerase II large subunit

Gene families : OG_42_0001434 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001434_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Selaginella: 110201
Cluster	HCCA clusters: Cluster_147

Target	Alias	Description	ECC score	Gene Family Method
Glyma.01G162200	No alias	RNA polymerase II large subunit	0.05	Orthogroups_2024-Update
Glyma.11G081200	No alias	RNA polymerase II large subunit	0.06	Orthogroups_2024-Update
Kfl00243_0080	kfl00243_0080_v1.1	(at5g60040 : 1445.0) Encodes a subunit of RNA polymerase...	0.05	Orthogroups_2024-Update
Kfl00550_0020	kfl00550_0020_v1.1	(at4g35800 : 2125.0) Encodes the unique largest subunit...	0.02	Orthogroups_2024-Update
Mp4g14340.1	No alias	subunit 1 of Pol II RNA polymerase	0.04	Orthogroups_2024-Update
PSME_00000873-RA	No alias	(at4g35800 : 2661.0) Encodes the unique largest subunit...	0.03	Orthogroups_2024-Update
Seita.6G058200.1	No alias	component *(NRPB1) of RNA polymerase II complex	0.02	Orthogroups_2024-Update
Sobic.007G044100.1	No alias	component *(NRPB1) of RNA polymerase II complex	0.03	Orthogroups_2024-Update
evm.model.contig_4462.5	No alias	(at4g35800 : 1580.0) Encodes the unique largest subunit...	0.02	Orthogroups_2024-Update
evm.model.tig00000241.15	No alias	(at4g35800 : 1627.0) Encodes the unique largest subunit...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0000428	DNA-directed RNA polymerase complex	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005665	RNA polymerase II, core complex	IEA	InterProScan predictions
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0006366	transcription by RNA polymerase II	IEA	InterProScan predictions
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
CC	GO:0030880	RNA polymerase complex	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044428	nuclear part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044451	nucleoplasm part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	None	Extended
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Predicted GO
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Predicted GO
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Predicted GO
MF	GO:0003712	transcription coregulator activity	IEP	Predicted GO
MF	GO:0003779	actin binding	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Predicted GO
BP	GO:0006952	defense response	IEP	Predicted GO
MF	GO:0008092	cytoskeletal protein binding	IEP	Predicted GO
MF	GO:0008270	zinc ion binding	IEP	Predicted GO
BP	GO:0009719	response to endogenous stimulus	IEP	Predicted GO
BP	GO:0009725	response to hormone	IEP	Predicted GO
BP	GO:0010033	response to organic substance	IEP	Predicted GO
CC	GO:0016592	mediator complex	IEP	Predicted GO
MF	GO:0017069	snRNA binding	IEP	Predicted GO
MF	GO:0017070	U6 snRNA binding	IEP	Predicted GO
MF	GO:0030623	U5 snRNA binding	IEP	Predicted GO
MF	GO:0042393	histone binding	IEP	Predicted GO
BP	GO:0050896	response to stimulus	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR007081	RNA_pol_Rpb1_5	844	1433
IPR007083	RNA_pol_Rpb1_4	735	837
IPR007073	RNA_pol_Rpb1_7	1179	1312
IPR007080	RNA_pol_Rpb1_1	14	369
IPR007066	RNA_pol_Rpb1_3	543	706
IPR007075	RNA_pol_Rpb1_6	910	1094
IPR000684	RNA_pol_II_repeat_euk	1561	1574
IPR000684	RNA_pol_II_repeat_euk	1715	1728
IPR000684	RNA_pol_II_repeat_euk	1729	1742
IPR000684	RNA_pol_II_repeat_euk	1701	1714
IPR000684	RNA_pol_II_repeat_euk	1589	1602
IPR000684	RNA_pol_II_repeat_euk	1694	1707
IPR000684	RNA_pol_II_repeat_euk	1722	1735
IPR000684	RNA_pol_II_repeat_euk	1645	1658
IPR000684	RNA_pol_II_repeat_euk	1659	1672
IPR000684	RNA_pol_II_repeat_euk	1575	1588
IPR000684	RNA_pol_II_repeat_euk	1603	1616
IPR000684	RNA_pol_II_repeat_euk	1708	1721
IPR000684	RNA_pol_II_repeat_euk	1673	1686
IPR000684	RNA_pol_II_repeat_euk	1680	1693
IPR000684	RNA_pol_II_repeat_euk	1631	1644
IPR000684	RNA_pol_II_repeat_euk	1617	1630
IPR000684	RNA_pol_II_repeat_euk	1687	1700
IPR000684	RNA_pol_II_repeat_euk	1547	1560
IPR000722	RNA_pol_asu	371	539

External Links

No external refs found!

110201

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation