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  4. Sequence
  5. 113567

113567


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 113567
Cluster HCCA clusters: Cluster_139

Target Alias Description ECC score Gene Family Method Actions
16621 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
At4g18840 No alias Pentatricopeptide repeat-containing protein At4g18840... 0.03 Orthogroups_2024-Update
Bradi3g37252 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.13G119700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G028520.2 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU3Hr1G073540.14 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G014730.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os02g44480 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g53630 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
MA_115669g0020 No alias (at4g18750 : 620.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
MA_470679g0010 No alias (at3g24000 : 433.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00013106-RA No alias (at4g13650 : 681.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00025402-RA No alias (at3g02010 : 629.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
Seita.5G405500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G436400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G403500.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc08g076150 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Sopen01g036300 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 364 390
IPR002885 Pentatricopeptide_repeat 393 421
IPR002885 Pentatricopeptide_repeat 295 323
IPR002885 Pentatricopeptide_repeat 466 493
IPR002885 Pentatricopeptide_repeat 60 83
IPR002885 Pentatricopeptide_repeat 161 187
IPR002885 Pentatricopeptide_repeat 262 284
IPR002885 Pentatricopeptide_repeat 189 219
IPR002885 Pentatricopeptide_repeat 645 671
IPR002885 Pentatricopeptide_repeat 86 133
IPR002885 Pentatricopeptide_repeat 515 573
IPR032867 DYW_dom 675 799
No external refs found!