146079

Description : RNA polymerase I-associated factor PAF67

Gene families : OG_42_0004802 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004802_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Selaginella: 146079
Cluster	HCCA clusters: Cluster_97

Target	Alias	Description	ECC score	Gene Family Method
Kfl00812_0040	kfl00812_0040_v1.1	(at5g25757 : 660.0) RNA polymerase I-associated factor...	0.02	Orthogroups_2024-Update
Potri.006G241300	No alias	RNA polymerase I-associated factor PAF67	0.03	Orthogroups_2024-Update
Solyc08g068340	No alias	Eukaryotic translation initiation factor 3 subunit L...	0.02	Orthogroups_2024-Update
evm.model.contig_2044.8	No alias	(at5g25757 : 381.0) RNA polymerase I-associated factor...	0.02	Orthogroups_2024-Update
evm.model.tig00022075.15	No alias	(at5g25757 : 366.0) RNA polymerase I-associated factor...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003743	translation initiation factor activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	InterProScan predictions
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEA	InterProScan predictions
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Predicted GO
BP	GO:0016485	protein processing	IEP	Predicted GO
BP	GO:0016567	protein ubiquitination	IEP	Predicted GO
BP	GO:0019538	protein metabolic process	IEP	Predicted GO
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Predicted GO
BP	GO:0032446	protein modification by small protein conjugation	IEP	Predicted GO
BP	GO:0044267	cellular protein metabolic process	IEP	Predicted GO
BP	GO:0051604	protein maturation	IEP	Predicted GO
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR019382	eIF3l	112	518

External Links

No external refs found!