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  4. Sequence
  5. 164675

164675


Description : global transcription factor group B1


Gene families : OG_42_0003957 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003957_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 164675
Cluster HCCA clusters: Cluster_162

Target Alias Description ECC score Gene Family Method Actions
Bradi2g21217 No alias global transcription factor group B1 0.09 Orthogroups_2024-Update
Brara.B01624.1 No alias component *(SPT6) of SPT6-IWS1 transcription elongation complex 0.03 Orthogroups_2024-Update
Glyma.03G121000 No alias global transcription factor group B1 0.07 Orthogroups_2024-Update
HORVU1Hr1G067820.2 No alias component *(SPT6) of SPT6-IWS1 transcription elongation complex 0.04 Orthogroups_2024-Update
Kfl00507_0030 kfl00507_0030_v1.1 (at1g65440 : 900.0) Related to yeast Spt6 protein, which... 0.05 Orthogroups_2024-Update
Pp1s23_254V6 No alias global transcription factor group 0.06 Orthogroups_2024-Update
Seita.3G193600.1 No alias component *(SPT6) of SPT6-IWS1 transcription elongation complex 0.05 Orthogroups_2024-Update
Sobic.009G182600.1 No alias component *(SPT6) of SPT6-IWS1 transcription elongation complex 0.05 Orthogroups_2024-Update
Solyc10g081020 No alias Transcription elongation factor SPT6 (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
evm.model.contig_543.1 No alias (gnl|cdd|68872 : 305.0) no description available &... 0.03 Orthogroups_2024-Update
evm.model.tig00001486.8 No alias (at1g65440 : 311.0) Related to yeast Spt6 protein, which... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006820 anion transport IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
BP GO:0008272 sulfate transport IEP Predicted GO
MF GO:0008509 anion transmembrane transporter activity IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Predicted GO
MF GO:0015116 sulfate transmembrane transporter activity IEP Predicted GO
BP GO:0015698 inorganic anion transport IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0072348 sulfur compound transport IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR028231 Spt6_YqgF 530 685
IPR035420 Spt6_SH2 1018 1227
IPR032706 Spt6_HHH 692 794
IPR003029 S1_domain 921 988
No external refs found!