1. Home
  2. Species
  3. Selaginella moellendorffii
  4. Sequence
  5. 173603

173603


Description : Pre-mRNA-processing-splicing factor


Gene families : OG_42_0004183 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004183_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 173603
Cluster HCCA clusters: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
At1g80070 No alias SUS2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7J7] 0.02 Orthogroups_2024-Update
Bradi1g48264 No alias Pre-mRNA-processing-splicing factor 0.09 Orthogroups_2024-Update
Cre01.g016050 No alias Pre-mRNA-processing-splicing factor 0.02 Orthogroups_2024-Update
Glyma.13G366100 No alias Pre-mRNA-processing-splicing factor 0.05 Orthogroups_2024-Update
Glyma.15G007100 No alias Pre-mRNA-processing-splicing factor 0.04 Orthogroups_2024-Update
Kfl00461_0140 kfl00461_0140_v1.1 (at1g80070 : 4182.0) a genetic locus involved in... 0.02 Orthogroups_2024-Update
MA_7388g0020 No alias (at1g80070 : 4282.0) a genetic locus involved in... 0.02 Orthogroups_2024-Update
PSME_00012209-RA No alias (at1g80070 : 3342.0) a genetic locus involved in... 0.05 Orthogroups_2024-Update
Pp1s438_24V6 No alias pre-mrna processing factor 8 0.02 Orthogroups_2024-Update
Solyc07g008880 No alias Pre-mRNA-processing-splicing factor 8 (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
evm.model.tig00000093.137 No alias (at1g80070 : 3340.0) a genetic locus involved in... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA InterProScan predictions
MF GO:0003723 RNA binding IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0017070 U6 snRNA binding IEA InterProScan predictions
MF GO:0030623 U5 snRNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0004629 phospholipase C activity IEP Predicted GO
CC GO:0005665 RNA polymerase II, core complex IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006366 transcription by RNA polymerase II IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000555 JAMM/MPN+_dom 2133 2231
IPR012984 PROCT 2244 2364
IPR021983 PRP8_domainIV 1792 2021
IPR019582 RRM_spliceosomal_PrP8 1018 1108
IPR012592 PROCN 428 833
IPR019580 Prp8_U6-snRNA-bd 1474 1632
IPR019581 Prp8_U5-snRNA-bd 1242 1375
IPR012591 PRO8NT 71 238
No external refs found!