PSME_00001209-RA

Description : (at4g03210 : 309.0) encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.; xyloglucan endotransglucosylase/hydrolase 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q39857|xth_soybn : 275.0) Probable xyloglucan endotransglucosylase/hydrolase precursor (EC 2.4.1.207) (Fragment) - Glycine max (Soybean) & (reliability: 618.0) & (original description: no original description)

Gene families : OG_42_0000032 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000032_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00001209-RA
Cluster	HCCA clusters: Cluster_90

Target	Alias	Description	ECC score	Gene Family Method
98543	No alias	xyloglucan endotransglucosylase/hydrolase 5	0.03	Orthogroups_2024-Update
A4A49_17794	No alias	putative xyloglucan endotransglucosylasehydrolase protein 26	0.02	Orthogroups_2024-Update
Bradi1g27867	No alias	xyloglucan endotransglucosylase/hydrolase 32	0.03	Orthogroups_2024-Update
GRMZM2G128876	No alias	xyloglucan endotransglucosylase/hydrolase 25	0.02	Orthogroups_2024-Update
Glyma.02G068900	No alias	xyloglucan endotransglucosylase/hydrolase 5	0.03	Orthogroups_2024-Update
Glyma.09G062600	No alias	xyloglucan endotransglycosylase 6	0.06	Orthogroups_2024-Update
Glyma.11G044800	No alias	xyloglucan endotransglucosylase/hydrolase 6	0.03	Orthogroups_2024-Update
Glyma.13G322500	No alias	xyloglucan endotransglucosylase/hydrolase 32	0.03	Orthogroups_2024-Update
LOC_Os06g48200	No alias	glycosyl hydrolases family 16, putative, expressed	0.02	Orthogroups_2024-Update
MA_11511g0010	No alias	(at2g36870 : 354.0) xyloglucan...	0.03	Orthogroups_2024-Update
MA_146337g0020	No alias	(at5g13870 : 266.0) EXGT-A4, endoxyloglucan...	0.04	Orthogroups_2024-Update
MA_328340g0010	No alias	(at4g03210 : 285.0) encodes a member of xyloglucan...	0.04	Orthogroups_2024-Update
MA_75919g0010	No alias	(at2g36870 : 300.0) xyloglucan...	0.04	Orthogroups_2024-Update
Mp4g00700.1	No alias	Enzyme classification.EC_2 transferases.EC_2.4...	0.02	Orthogroups_2024-Update
PSME_00013047-RA	No alias	(q41638\|xtha_phaan : 220.0) Xyloglucan...	0.04	Orthogroups_2024-Update
PSME_00016554-RA	No alias	(at2g36870 : 288.0) xyloglucan...	0.03	Orthogroups_2024-Update
PSME_00022622-RA	No alias	(q41638\|xtha_phaan : 479.0) Xyloglucan...	0.03	Orthogroups_2024-Update
PSME_00022999-RA	No alias	(at5g57530 : 289.0) xyloglucan...	0.03	Orthogroups_2024-Update
PSME_00035710-RA	No alias	(at2g36870 : 291.0) xyloglucan...	0.05	Orthogroups_2024-Update
PSME_00039728-RA	No alias	(q39857\|xth_soybn : 318.0) Probable xyloglucan...	0.03	Orthogroups_2024-Update
PSME_00047371-RA	No alias	(p35694\|bru1_soybn : 289.0) Brassinosteroid-regulated...	0.05	Orthogroups_2024-Update
PSME_00047671-RA	No alias	(at4g37800 : 399.0) xyloglucan...	0.04	Orthogroups_2024-Update
PSME_00055766-RA	No alias	(q8lnz5\|xthb_phaan : 137.0) Probable xyloglucan...	0.04	Orthogroups_2024-Update
Potri.005G201200	No alias	xyloglucan endotransglucosylase/hydrolase 15	0.03	Orthogroups_2024-Update
Potri.018G095100	No alias	xyloglucan endotransglycosylase 6	0.04	Orthogroups_2024-Update
Solyc11g065600	No alias	xyloglucan endotransglucosylase-hydrolase 4	0.02	Orthogroups_2024-Update
Sopen07g026530	No alias	Glycosyl hydrolases family 16	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
CC	GO:0005618	cell wall	IEA	InterProScan predictions
BP	GO:0005975	carbohydrate metabolic process	IEA	InterProScan predictions
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016757	transferase activity, transferring glycosyl groups	None	Extended
MF	GO:0016758	transferase activity, transferring hexosyl groups	None	Extended
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEA	InterProScan predictions
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046527	glucosyltransferase activity	None	Extended
CC	GO:0048046	apoplast	IEA	InterProScan predictions
BP	GO:0071704	organic substance metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	Predicted GO
MF	GO:0001871	pattern binding	IEP	Predicted GO
BP	GO:0003333	amino acid transmembrane transport	IEP	Predicted GO
MF	GO:0004180	carboxypeptidase activity	IEP	Predicted GO
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	Predicted GO
BP	GO:0005991	trehalose metabolic process	IEP	Predicted GO
BP	GO:0005992	trehalose biosynthetic process	IEP	Predicted GO
BP	GO:0006766	vitamin metabolic process	IEP	Predicted GO
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Predicted GO
BP	GO:0006771	riboflavin metabolic process	IEP	Predicted GO
BP	GO:0006865	amino acid transport	IEP	Predicted GO
MF	GO:0008236	serine-type peptidase activity	IEP	Predicted GO
MF	GO:0008238	exopeptidase activity	IEP	Predicted GO
MF	GO:0008686	3,4-dihydroxy-2-butanone-4-phosphate synthase activity	IEP	Predicted GO
BP	GO:0009110	vitamin biosynthetic process	IEP	Predicted GO
BP	GO:0009231	riboflavin biosynthetic process	IEP	Predicted GO
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Predicted GO
MF	GO:0010333	terpene synthase activity	IEP	Predicted GO
BP	GO:0015711	organic anion transport	IEP	Predicted GO
BP	GO:0015849	organic acid transport	IEP	Predicted GO
MF	GO:0016829	lyase activity	IEP	Predicted GO
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Predicted GO
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	Predicted GO
MF	GO:0017171	serine hydrolase activity	IEP	Predicted GO
MF	GO:0030246	carbohydrate binding	IEP	Predicted GO
MF	GO:0030247	polysaccharide binding	IEP	Predicted GO
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Predicted GO
BP	GO:0042726	flavin-containing compound metabolic process	IEP	Predicted GO
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0046351	disaccharide biosynthetic process	IEP	Predicted GO
BP	GO:0046942	carboxylic acid transport	IEP	Predicted GO
MF	GO:0070008	serine-type exopeptidase activity	IEP	Predicted GO
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	IEP	Predicted GO
BP	GO:0098656	anion transmembrane transport	IEP	Predicted GO
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Predicted GO
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Predicted GO
BP	GO:1903825	organic acid transmembrane transport	IEP	Predicted GO
BP	GO:1905039	carboxylic acid transmembrane transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR010713	XET_C	247	289
IPR000757	GH16	40	215

External Links

No external refs found!

PSME_00001209-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation