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  5. PSME_00001614-RA

PSME_00001614-RA


Description : (p34800|ccn1_antma : 345.0) G2/mitotic-specific cyclin-1 - Antirrhinum majus (Garden snapdragon) & (at3g11520 : 322.0) Encodes a B-type mitotic cyclin.; CYCLIN B1;3 (CYCB1;3); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle, response to cyclopentenone, cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT5G06150.1); Has 4455 Blast hits to 4454 proteins in 375 species: Archae - 0; Bacteria - 0; Metazoa - 2045; Fungi - 567; Plants - 1152; Viruses - 37; Other Eukaryotes - 654 (source: NCBI BLink). & (reliability: 644.0) & (original description: no original description)


Gene families : OG_42_0000120 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00001614-RA
Cluster HCCA clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
97411 No alias Cyclin A1;1 0.02 Orthogroups_2024-Update
A4A49_05961 No alias g2mitotic-specific cyclin-1 0.02 Orthogroups_2024-Update
A4A49_40931 No alias g2mitotic-specific cyclin s13-6 0.03 Orthogroups_2024-Update
Brara.C00237.1 No alias regulatory protein *(CYCB) of cell cycle 0.02 Orthogroups_2024-Update
Brara.E01867.1 No alias regulatory protein *(TAM) involved in metaphase to... 0.02 Orthogroups_2024-Update
Glyma.02G277600 No alias Cyclin family protein 0.03 Orthogroups_2024-Update
Glyma.03G123600 No alias Cyclin family protein 0.03 Orthogroups_2024-Update
Glyma.04G246600 No alias Cyclin A1;1 0.03 Orthogroups_2024-Update
Glyma.06G116100 No alias Cyclin A1;1 0.03 Orthogroups_2024-Update
Glyma.08G234900 No alias cyclin b3;1 0.03 Orthogroups_2024-Update
Glyma.14G037100 No alias Cyclin family protein 0.03 Orthogroups_2024-Update
Glyma.19G127200 No alias Cyclin family protein 0.03 Orthogroups_2024-Update
HORVU0Hr1G022770.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Kfl00560_0010 kfl00560_0010_v1.1 (at1g76310 : 298.0) core cell cycle genes; CYCLIN B2;4... 0.02 Orthogroups_2024-Update
MA_28323g0010 No alias (at5g11300 : 355.0) mitotic-like cyclin, core cell cycle... 0.03 Orthogroups_2024-Update
MA_6619g0010 No alias (at1g44110 : 409.0) Cyclin A1;1 (CYCA1;1); CONTAINS... 0.03 Orthogroups_2024-Update
MA_88982g0010 No alias (at5g11300 : 380.0) mitotic-like cyclin, core cell cycle... 0.04 Orthogroups_2024-Update
Mp5g10030.1 No alias cyclin (CYCB) 0.02 Orthogroups_2024-Update
PSME_00025883-RA No alias (p30278|ccnb2_medsa : 236.0) G2/mitotic-specific... 0.03 Orthogroups_2024-Update
Potri.006G035200 No alias Cyclin family protein 0.02 Orthogroups_2024-Update
Potri.016G033000 No alias Cyclin family protein 0.03 Orthogroups_2024-Update
Pp1s147_169V6 No alias n-terminal domain containing expressed 0.03 Orthogroups_2024-Update
Pp1s271_10V6 No alias ccb15_orysj ame: full=cyclin-b1-5 ame: full=g2... 0.03 Orthogroups_2024-Update
Pp1s84_1V6 No alias n-terminal domain containing expressed 0.02 Orthogroups_2024-Update
Pp1s89_130V6 No alias b-like cyclin 0.03 Orthogroups_2024-Update
Solyc01g009040 No alias cyclinB1_4 0.02 Orthogroups_2024-Update
Solyc03g032190 No alias cyclinB2_7 0.02 Orthogroups_2024-Update
Solyc10g080950 No alias cyclinB1_2 0.02 Orthogroups_2024-Update
Solyc11g005090 No alias cyclin A1 0.02 Orthogroups_2024-Update
evm.model.contig_554.3 No alias (q40671|ccnb2_orysa : 240.0) G2/mitotic-specific... 0.02 Orthogroups_2024-Update
evm.model.tig00000769.38 No alias (at1g76310 : 252.0) core cell cycle genes; CYCLIN B2;4... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR004367 Cyclin_C-dom 461 576
IPR006671 Cyclin_N 334 458
No external refs found!