1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00002449-RA

PSME_00002449-RA


Description : (at2g01250 : 310.0) Ribosomal protein L30/L7 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, chloroplast, plasma membrane, large ribosomal subunit, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L30p/L7e, conserved region (InterPro:IPR000517), Ribosomal protein L30, conserved site (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: Ribosomal protein L30/L7 family protein (TAIR:AT3G13580.1); Has 1075 Blast hits to 1075 proteins in 310 species: Archae - 55; Bacteria - 0; Metazoa - 442; Fungi - 204; Plants - 182; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink). & (reliability: 620.0) & (original description: no original description)


Gene families : OG_42_0001114 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001114_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00002449-RA
Cluster HCCA clusters: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
103994 No alias Ribosomal protein L30/L7 family protein 0.02 Orthogroups_2024-Update
At3g13580 No alias Ribosomal protein L30/L7 family protein... 0.03 Orthogroups_2024-Update
Bradi1g04950 No alias Ribosomal protein L30/L7 family protein 0.04 Orthogroups_2024-Update
Bradi5g20900 No alias Ribosomal protein L30/L7 family protein 0.04 Orthogroups_2024-Update
Brara.B03026.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Brara.D02679.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Brara.F03496.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Brara.I02011.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Cre12.g537800 No alias Ribosomal protein L30/L7 family protein 0.03 Orthogroups_2024-Update
GRMZM5G868433 No alias Ribosomal protein L30/L7 family protein 0.02 Orthogroups_2024-Update
Glyma.07G020000 No alias Ribosomal protein L30/L7 family protein 0.03 Orthogroups_2024-Update
Glyma.15G167400 No alias Ribosomal protein L30/L7 family protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G108990.2 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
LOC_Os04g51630 No alias 60S ribosomal protein L7, putative, expressed 0.03 Orthogroups_2024-Update
Mp3g13040.1 No alias component RPL7 of LSU proteome component 0.02 Orthogroups_2024-Update
Potri.008G008000 No alias Ribosomal protein L30/L7 family protein 0.03 Orthogroups_2024-Update
Potri.010G250900 No alias Ribosomal protein L30/L7 family protein 0.05 Orthogroups_2024-Update
Pp1s243_40V6 No alias 60s ribosomal protein l7-2 0.03 Orthogroups_2024-Update
Pp1s7_369V6 No alias 60s ribosomal protein l7-2 0.03 Orthogroups_2024-Update
Seita.1G117100.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Seita.6G017200.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Seita.7G228400.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Sobic.007G085000.2 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Sobic.007G085001.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Solyc07g008370 No alias 60S ribosomal protein L7 (AHRD V3.3 *** A0A072VPV6_MEDTR) 0.03 Orthogroups_2024-Update
Solyc08g075090 No alias bHLH transcription factor144 0.03 Orthogroups_2024-Update
Sopen07g004260 No alias Ribosomal L30 N-terminal domain 0.06 Orthogroups_2024-Update
Sopen08g023720 No alias Ribosomal L30 N-terminal domain 0.05 Orthogroups_2024-Update
Sopen12g032080 No alias Ribosomal L30 N-terminal domain 0.05 Orthogroups_2024-Update
evm.model.contig_2085.3 No alias (at3g13580 : 237.0) Ribosomal protein L30/L7 family... 0.03 Orthogroups_2024-Update
evm.model.tig00020909.42 No alias (at2g44120 : 205.0) Ribosomal protein L30/L7 family... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
MF GO:0004359 glutaminase activity IEP Predicted GO
MF GO:0004665 prephenate dehydrogenase (NADP+) activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
CC GO:0005849 mRNA cleavage factor complex IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006378 mRNA polyadenylation IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006570 tyrosine metabolic process IEP Predicted GO
BP GO:0006571 tyrosine biosynthetic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006732 coenzyme metabolic process IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008977 prephenate dehydrogenase (NAD+) activity IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Predicted GO
BP GO:0009108 coenzyme biosynthetic process IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009229 thiamine diphosphate biosynthetic process IEP Predicted GO
MF GO:0015035 protein disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015036 disulfide oxidoreductase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
CC GO:0016469 proton-transporting two-sector ATPase complex IEP Predicted GO
CC GO:0016471 vacuolar proton-transporting V-type ATPase complex IEP Predicted GO
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Predicted GO
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
MF GO:0030975 thiamine binding IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0033176 proton-transporting V-type ATPase complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042357 thiamine diphosphate metabolic process IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042816 vitamin B6 metabolic process IEP Predicted GO
BP GO:0042819 vitamin B6 biosynthetic process IEP Predicted GO
BP GO:0042822 pyridoxal phosphate metabolic process IEP Predicted GO
BP GO:0042823 pyridoxal phosphate biosynthetic process IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044437 vacuolar part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046184 aldehyde biosynthetic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0051186 cofactor metabolic process IEP Predicted GO
BP GO:0051188 cofactor biosynthetic process IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
BP GO:0090407 organophosphate biosynthetic process IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
BP GO:1901615 organic hydroxy compound metabolic process IEP Predicted GO
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR012988 Ribosomal_L30_N 12 83
IPR016082 Ribosomal_L30_ferredoxin-like 88 138
No external refs found!