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  5. PSME_00011424-RA

PSME_00011424-RA


Description : (at5g24510 : 97.1) 60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosolic ribosome, ribosome; EXPRESSED IN: inflorescence meristem, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT1G01100.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p52855|rla1_maize : 93.6) 60S acidic ribosomal protein P1 (L12) - Zea mays (Maize) & (reliability: 194.2) & (original description: no original description)


Gene families : OG_42_0002306 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002306_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00011424-RA
Cluster HCCA clusters: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
133023 No alias 60S acidic ribosomal protein family 0.14 Orthogroups_2024-Update
At1g01100 No alias 60S acidic ribosomal protein P1-1... 0.05 Orthogroups_2024-Update
Bradi3g13750 No alias 60S acidic ribosomal protein family 0.04 Orthogroups_2024-Update
Brara.C02860.1 No alias component *(RPP1) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Brara.I00080.1 No alias component *(RPP1) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Brara.I05590.1 No alias component *(RPP1) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Brara.J00070.1 No alias component *(RPP1) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Cre17.g738300 No alias 60S acidic ribosomal protein family 0.12 Orthogroups_2024-Update
Glyma.03G260900 No alias 60S acidic ribosomal protein family 0.1 Orthogroups_2024-Update
Glyma.04G229000 No alias 60S acidic ribosomal protein family 0.06 Orthogroups_2024-Update
Glyma.06G135800 No alias 60S acidic ribosomal protein family 0.07 Orthogroups_2024-Update
Glyma.19G259800 No alias 60S acidic ribosomal protein family 0.09 Orthogroups_2024-Update
HORVU7Hr1G075360.2 No alias component *(RPP1) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Kfl01021_0050 kfl01021_0050_v1.1 (p29763|rla1_chlre : 92.0) 60S acidic ribosomal protein... 0.03 Orthogroups_2024-Update
LOC_Os08g02340 No alias 60S acidic ribosomal protein, putative, expressed 0.05 Orthogroups_2024-Update
Mp6g11950.1 No alias component RPP1 of LSU proteome component 0.1 Orthogroups_2024-Update
Potri.012G021700 No alias 60S acidic ribosomal protein family 0.05 Orthogroups_2024-Update
Potri.014G105400 No alias 60S acidic ribosomal protein family 0.06 Orthogroups_2024-Update
Potri.015G004700 No alias 60S acidic ribosomal protein family 0.05 Orthogroups_2024-Update
Pp1s134_153V6 No alias 60s acidic ribosomal protein 0.02 Orthogroups_2024-Update
Pp1s152_152V6 No alias 60s acidic ribosomal protein 0.09 Orthogroups_2024-Update
Pp1s28_131V6 No alias 60s acidic ribosomal protein 0.07 Orthogroups_2024-Update
Pp1s49_284V6 No alias 60s acidic ribosomal protein 0.02 Orthogroups_2024-Update
Pp1s68_115V6 No alias 60s acidic ribosomal protein p1 0.11 Orthogroups_2024-Update
Sobic.007G018300.1 No alias component *(RPP1) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Solyc01g104370 No alias 60S acidic ribosomal protein P1 (AHRD V3.3 *** A0A199VEQ5_ANACO) 0.09 Orthogroups_2024-Update
Sopen01g002170 No alias 60s Acidic ribosomal protein 0.07 Orthogroups_2024-Update
Sopen01g046810 No alias 60s Acidic ribosomal protein 0.08 Orthogroups_2024-Update
evm.model.contig_2051.2 No alias no hits & (original description: no original description) 0.08 Orthogroups_2024-Update
evm.model.tig00000342.4 No alias (p52855|rla1_maize : 85.9) 60S acidic ribosomal protein... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004129 cytochrome-c oxidase activity IEP Predicted GO
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
MF GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity IEP Predicted GO
MF GO:0004602 glutathione peroxidase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005740 mitochondrial envelope IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
CC GO:0008250 oligosaccharyltransferase complex IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0015002 heme-copper terminal oxidase activity IEP Predicted GO
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Predicted GO
MF GO:0015078 proton transmembrane transporter activity IEP Predicted GO
BP GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient IEP Predicted GO
BP GO:0015991 ATP hydrolysis coupled proton transport IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Predicted GO
MF GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031967 organelle envelope IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0031975 envelope IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043085 positive regulation of catalytic activity IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044093 positive regulation of molecular function IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0090662 ATP hydrolysis coupled transmembrane transport IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0097526 spliceosomal tri-snRNP complex IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
BP GO:0099131 ATP hydrolysis coupled ion transmembrane transport IEP Predicted GO
BP GO:0099132 ATP hydrolysis coupled cation transmembrane transport IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!