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  5. PSME_00015628-RA

PSME_00015628-RA


Description : (at3g22230 : 220.0) Ribosomal L27e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L27e, conserved site (InterPro:IPR018262), Ribosomal protein L27e (InterPro:IPR001141); BEST Arabidopsis thaliana protein match is: Ribosomal L27e protein family (TAIR:AT4G15000.1); Has 765 Blast hits to 765 proteins in 292 species: Archae - 0; Bacteria - 0; Metazoa - 342; Fungi - 149; Plants - 139; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink). & (q05462|rl27_pea : 213.0) 60S ribosomal protein L27 - Pisum sativum (Garden pea) & (reliability: 440.0) & (original description: no original description)


Gene families : OG_42_0001324 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001324_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00015628-RA
Cluster HCCA clusters: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
166700 No alias Ribosomal L27e protein family 0.12 Orthogroups_2024-Update
A4A49_05318 No alias 60s ribosomal protein l27 0.15 Orthogroups_2024-Update
At2g32220 No alias 60S ribosomal protein L27-1... 0.04 Orthogroups_2024-Update
At3g22230 No alias 60S ribosomal protein L27-2... 0.05 Orthogroups_2024-Update
At4g15000 No alias 60S ribosomal protein L27 [Source:UniProtKB/TrEMBL;Acc:Q0WRB8] 0.04 Orthogroups_2024-Update
Bradi1g30210 No alias Ribosomal L27e protein family 0.03 Orthogroups_2024-Update
Brara.A02020.1 No alias component *(eL27) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Brara.A02735.1 No alias component *(eL27) of large ribosomal-subunit (LSU) proteome 0.09 Orthogroups_2024-Update
Brara.C03864.1 No alias component *(eL27) of large ribosomal-subunit (LSU) proteome 0.14 Orthogroups_2024-Update
Brara.E01420.1 No alias component *(eL27) of large ribosomal-subunit (LSU) proteome 0.15 Orthogroups_2024-Update
Brara.E02021.1 No alias component *(eL27) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Brara.H00790.1 No alias component *(eL27) of large ribosomal-subunit (LSU) proteome 0.12 Orthogroups_2024-Update
Cre17.g701650 No alias Ribosomal L27e protein family 0.17 Orthogroups_2024-Update
GRMZM2G016250 No alias Ribosomal L27e protein family 0.12 Orthogroups_2024-Update
GRMZM2G326066 No alias Ribosomal L27e protein family 0.06 Orthogroups_2024-Update
Glyma.05G132800 No alias Ribosomal L27e protein family 0.04 Orthogroups_2024-Update
Glyma.09G052100 No alias Ribosomal L27e protein family 0.06 Orthogroups_2024-Update
Glyma.15G158400 No alias Ribosomal L27e protein family 0.1 Orthogroups_2024-Update
HORVU7Hr1G063280.1 No alias component *(eL27) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Kfl00071_0270 kfl00071_0270_v1.1 (q05462|rl27_pea : 209.0) 60S ribosomal protein L27 -... 0.05 Orthogroups_2024-Update
LOC_Os02g18380 No alias 60S ribosomal protein L27-3, putative, expressed 0.03 Orthogroups_2024-Update
Potri.001G342500 No alias Ribosomal L27e protein family 0.04 Orthogroups_2024-Update
Potri.016G019000 No alias Ribosomal L27e protein family 0.03 Orthogroups_2024-Update
Pp1s101_74V6 No alias ribosomal protein 0.11 Orthogroups_2024-Update
Pp1s221_49V6 No alias ribosomal protein 0.27 Orthogroups_2024-Update
Pp1s83_116V6 No alias 60S ribosomal protein L27 [Pisum sativum] 0.17 Orthogroups_2024-Update
Seita.4G160400.1 No alias component *(eL27) of large ribosomal-subunit (LSU) proteome 0.11 Orthogroups_2024-Update
Sobic.006G221200.1 No alias component *(eL27) of large ribosomal-subunit (LSU) proteome 0.14 Orthogroups_2024-Update
Sobic.010G230700.1 No alias component *(eL27) of large ribosomal-subunit (LSU) proteome 0.13 Orthogroups_2024-Update
Solyc06g073300 No alias 60S ribosomal protein L27 (AHRD V3.3 *** A0A0V0HNB9_SOLCH) 0.14 Orthogroups_2024-Update
Solyc07g043360 No alias 60S ribosomal protein L27 (AHRD V3.3 *** K4CEJ5_SOLLC) 0.03 Orthogroups_2024-Update
Sopen06g029660 No alias Ribosomal L27e protein family 0.18 Orthogroups_2024-Update
Sopen07g022920 No alias Ribosomal L27e protein family 0.13 Orthogroups_2024-Update
evm.model.contig_2045.6 No alias (p41101|rl27_soltu : 144.0) 60S ribosomal protein L27 -... 0.21 Orthogroups_2024-Update
evm.model.tig00021275.23 No alias (at3g22230 : 163.0) Ribosomal L27e protein family;... 0.17 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0004129 cytochrome-c oxidase activity IEP Predicted GO
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
MF GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005740 mitochondrial envelope IEP Predicted GO
CC GO:0005787 signal peptidase complex IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006066 alcohol metabolic process IEP Predicted GO
BP GO:0006465 signal peptide processing IEP Predicted GO
BP GO:0006729 tetrahydrobiopterin biosynthetic process IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
MF GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity IEP Predicted GO
CC GO:0008250 oligosaccharyltransferase complex IEP Predicted GO
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
MF GO:0015002 heme-copper terminal oxidase activity IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Predicted GO
MF GO:0015078 proton transmembrane transporter activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
BP GO:0015672 monovalent inorganic cation transport IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
BP GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient IEP Predicted GO
BP GO:0015991 ATP hydrolysis coupled proton transport IEP Predicted GO
CC GO:0016469 proton-transporting two-sector ATPase complex IEP Predicted GO
CC GO:0016471 vacuolar proton-transporting V-type ATPase complex IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Predicted GO
MF GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019751 polyol metabolic process IEP Predicted GO
MF GO:0019829 cation-transporting ATPase activity IEP Predicted GO
MF GO:0022853 active ion transmembrane transporter activity IEP Predicted GO
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Predicted GO
CC GO:0031967 organelle envelope IEP Predicted GO
CC GO:0031975 envelope IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0033176 proton-transporting V-type ATPase complex IEP Predicted GO
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Predicted GO
BP GO:0034220 ion transmembrane transport IEP Predicted GO
BP GO:0034311 diol metabolic process IEP Predicted GO
BP GO:0034312 diol biosynthetic process IEP Predicted GO
BP GO:0042558 pteridine-containing compound metabolic process IEP Predicted GO
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Predicted GO
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
CC GO:0044437 vacuolar part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044455 mitochondrial membrane part IEP Predicted GO
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Predicted GO
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP Predicted GO
BP GO:0046146 tetrahydrobiopterin metabolic process IEP Predicted GO
BP GO:0046165 alcohol biosynthetic process IEP Predicted GO
BP GO:0046173 polyol biosynthetic process IEP Predicted GO
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
BP GO:0090662 ATP hydrolysis coupled transmembrane transport IEP Predicted GO
BP GO:0098655 cation transmembrane transport IEP Predicted GO
BP GO:0098660 inorganic ion transmembrane transport IEP Predicted GO
BP GO:0098662 inorganic cation transmembrane transport IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:0098798 mitochondrial protein complex IEP Predicted GO
CC GO:0098800 inner mitochondrial membrane protein complex IEP Predicted GO
BP GO:0099131 ATP hydrolysis coupled ion transmembrane transport IEP Predicted GO
BP GO:0099132 ATP hydrolysis coupled cation transmembrane transport IEP Predicted GO
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
BP GO:1902600 proton transmembrane transport IEP Predicted GO
CC GO:1905368 peptidase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001141 Ribosomal_L27e 52 135
No external refs found!